View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_low_3 (Length: 598)
Name: NF3185_low_3
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 12 - 580
Target Start/End: Complemental strand, 45513299 - 45512731
Alignment:
| Q |
12 |
tgagatgaaccagggatgacaagttcgtgaaagcatgaggtatttgaccataaagcccattgtaagaaaggtcaagaagggtaagtttctcaaagtgact |
111 |
Q |
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| T |
45513299 |
tgagatgcaccagggatgacaagttcgtgaaagcatgaggtatttgaccataaagcccattataagaaaggtcaagaagggtaagtttctcaaagtgacc |
45513200 |
T |
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| Q |
112 |
gaaccataatggaatagaagtgaaattatttccagaaaggtagagtgattcaatggaagtcatgtttccaaaagactcaggaatcggaccatgaagctca |
211 |
Q |
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| T |
45513199 |
gaaccataatggaatagaagtgaaattatttccagaaaggtagagtgattcaatggaagtcatgtttccaaaagactcaggaatcggaccatgaagctca |
45513100 |
T |
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| Q |
212 |
tttgatgagagatcaagatagataagagatgtcatgttttggaaagcataacgaggaatgagtgaattgtcaactctacatccagacagtgaaagattta |
311 |
Q |
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| T |
45513099 |
tttgatgagagatcaagatagataagagatgtcatgttttggaaagcataacgaggaatgagtgaattgtcaactctacatccagacagtgaaagattta |
45513000 |
T |
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| Q |
312 |
ataaagaaggaagtgtattgagtacctggaacaagttgcgcttgtcattgagacgaataccactcaagtcaaggtgtttgagtgagtgaaggtttgaaat |
411 |
Q |
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| T |
45512999 |
ataaagaaggaagtgtattgagtacctggaacaagttgcgcgtgtcattgagacgaataccactcaagtcaaggtgtttgagtgagtgaaggtttgaaat |
45512900 |
T |
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| Q |
412 |
ccaactggtgtcgtcatccatttgtaattctctctcttcaaattgcgtaaggtaatagtaattgaagctgagatcaaggaattgtaggttcttgagattt |
511 |
Q |
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| T |
45512899 |
ccaactggtgccgtcatccatttgtaattctctctcttcaaattgcgtaaggtaatagtaattgaagctgagatcaaggaatcgtaggttcttgagattt |
45512800 |
T |
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| Q |
512 |
ctgagactgttgggaatcctcccgctaagacgagcatgagacagagagagatactcaaggcgtcccatg |
580 |
Q |
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| T |
45512799 |
ctgagactgttgggaatcctcccgctaagacgagcatgagacagagagagatactcaaggcgtcccatg |
45512731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 45513624 - 45513524
Alignment:
| Q |
113 |
aaccataatggaatagaagtgaaattatttccagaaaggtagagtgattcaatggaagtcatgtttccaaaagactcaggaatcggaccatgaagctcat |
212 |
Q |
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| T |
45513624 |
aaccatgatggaattgaagttaaactatttttagaaaggctaaggtattcaattgaagtcatgtttcgaaaaacccctggaattggaccatgaagctcat |
45513525 |
T |
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| Q |
213 |
t |
213 |
Q |
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| T |
45513524 |
t |
45513524 |
T |
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