View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_low_34 (Length: 236)
Name: NF3185_low_34
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_low_34 |
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| [»] scaffold0150 (1 HSPs) |
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| [»] scaffold1202 (1 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6773 - 6546
Alignment:
| Q |
1 |
tctaatcctcatcctaatatcaagtccctagtttatctaggcttgctcatttcttataaacatgttggtatctcttatagttaaatttgtaaaatcccga |
100 |
Q |
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| T |
6773 |
tctaatcctcatcctaatatcaagtccctagtttatctaggtttgctgatcccttataaacatgttggtatctcttttagttaaatttgtaaaatcccga |
6674 |
T |
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| Q |
101 |
ccaagtccctcaaagcatcgttacatacacttcttttctaattgt-----nnnnnnnntaagaaaccaaattcctttaatctttaaataaactaacccac |
195 |
Q |
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| T |
6673 |
taaggtccctccaagcatcgttacatacacttcttttctaattgtaaaaaaaaaaaaataagaaatcaaattcctttaatctttaaataaactaacccac |
6574 |
T |
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| Q |
196 |
ctaaacaccactgttctaacacgtcaac |
223 |
Q |
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|||||||||||||||||| ||||||||| |
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| T |
6573 |
ctaaacaccactgttctagcacgtcaac |
6546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1202 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold1202
Description:
Target: scaffold1202; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1221 - 1447
Alignment:
| Q |
1 |
tctaatcctcatcctaatatcaagtccctagtttatctaggcttgctcatttcttataaacatgttggtatctcttatagttaaatttgtaaaatcccga |
100 |
Q |
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||||||||||| |||||||||||||||||||||| |||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
1221 |
tctaatcctcaccctaatatcaagtccctagtttgtctaggtttgctgatcccttataaacatgttggtatctctgtaagttaaatttgtaaaatcctga |
1320 |
T |
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| Q |
101 |
ccaagtccctcaaagcatcgttacatacacttcttttctaattgt----nnnnnnnntaagaaaccaaattcctttaatctttaaataaactaacccacc |
196 |
Q |
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| T |
1321 |
taaggtccctccaagcatcgttacatacacttcttttctaattgtaaaaaaaaaaaataagaaatcaaattcctttaatctttaaataaactaacccacc |
1420 |
T |
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| Q |
197 |
taaacaccactgttctaacacgtcaac |
223 |
Q |
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||||||||||||||||| ||||||||| |
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| T |
1421 |
taaacaccactgttctagcacgtcaac |
1447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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