View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_low_36 (Length: 234)
Name: NF3185_low_36
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 37085054 - 37085167
Alignment:
| Q |
6 |
aaaaagggccaagaaatccaccaggaatgacttcacaaacatagttacagatgtttgctggatcaagaatgctaaagaactttacacgactcttgaatcc |
105 |
Q |
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| T |
37085054 |
aaaaagggccaagaaatccaccaggaatgacttcacaaacatagttacagatgcttgctggatcaagaatgctaaagaactttacacgactcttgaatcc |
37085153 |
T |
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| Q |
106 |
ttcatgatttcacc |
119 |
Q |
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| T |
37085154 |
ttcatgatttcacc |
37085167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 37085195 - 37085283
Alignment:
| Q |
146 |
gaacaatctaagatcggaaaagatgttttacagaaagcataccttttggatatattgcatgcttactgcaccaatgttttccatacaca |
234 |
Q |
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| T |
37085195 |
gaacaatctaagaccggaaaagatgttttacagaaagcataccttttggatatattgcatgcttactgcaccaatgttttctatacaca |
37085283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 20673818 - 20673855
Alignment:
| Q |
181 |
agcataccttttggatatattgcatgcttactgcacca |
218 |
Q |
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| T |
20673818 |
agcataccttttggatatattgcatgcttattgcacca |
20673855 |
T |
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