View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_low_39 (Length: 227)
Name: NF3185_low_39
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 51848973 - 51848829
Alignment:
| Q |
7 |
atgcattgcatgtaaataaagaaggaactgaacctcaaccaatgctgcttccttcctagacaaagatccgacgatagaaagggaaagaccaacatccttc |
106 |
Q |
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| T |
51848973 |
atgcattgcatgtaaataaagaaggaactgaacctcaaccaatgctgcttccttcctagacaaagatccgacgatagaaggggaaagaccaacatccttc |
51848874 |
T |
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| Q |
107 |
gctcctgccattaacgctgcttctgtccatccaagcttcatctgt |
151 |
Q |
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| T |
51848873 |
gctcctgccattaacgctgtttctgtccatcccagcttcatctgt |
51848829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 51848810 - 51848769
Alignment:
| Q |
177 |
ccactattcacaaaacacgagctattgtaataatcaagatac |
218 |
Q |
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| T |
51848810 |
ccactattcacaaaacacgagctattgtaataaccaagatac |
51848769 |
T |
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