View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3185_low_41 (Length: 222)
Name: NF3185_low_41
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_low_41 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 42788871 - 42789057
Alignment:
| Q |
18 |
gaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42788871 |
gaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaat |
42788970 |
T |
|
| Q |
118 |
tcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42788971 |
tcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttct |
42789057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 42798409 - 42798595
Alignment:
| Q |
18 |
gaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42798409 |
gaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaat |
42798508 |
T |
|
| Q |
118 |
tcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42798509 |
tcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttct |
42798595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 34566633 - 34566725
Alignment:
| Q |
107 |
tggactcaaattcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatct |
199 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| |||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
34566633 |
tggactcatattcatccaacaaaacaaccctgcattacctttcaagcattcaattccagcacttttcaaaccttcaatgatcatttcatatct |
34566725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University