View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_low_5 (Length: 497)
Name: NF3185_low_5
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 38286630 - 38287110
Alignment:
| Q |
1 |
tcattttcaaataccaatctatcaacatcaaccctttgcgatcgtgaccctggcggtctgatgagaatatctcataatataagcaggcatattgtatgta |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38286630 |
tcattttcaaataccaatctatcatgatcaaccctttgctatcgtgaccctggcgatctgatgagaatatctcataatataagcaggcatattgtatgta |
38286729 |
T |
|
| Q |
101 |
tgtgtgtgggacaatgtgtgtgtacaaggagtacgtggggcaaagtcaaagtcgctggtgtttattattattcttgtgtgatttacaaattacaatataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||||| |
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| T |
38286730 |
tgtgtgtgggacaatgtgtgtgtacaaggagtacgtggggcaaagtcaaagtcgctggagtttattattattattgtgtgctttacgaattacaatataa |
38286829 |
T |
|
| Q |
201 |
tttgatttgagttgatagatagatagaattaatgaatgaattgaaatggtcgttgattcttttctttgccacataataatcatcacaatacagtgatagt |
300 |
Q |
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|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38286830 |
tttgctttgagttgatagatagatagaattaatgaatgaattgaaattgtcgttgattcttttctttgccacataataatcatcataatacagtgatagt |
38286929 |
T |
|
| Q |
301 |
cggcaaatccctctttaacctatctcttaattatttgtttagttaactaccaactatataactttgcatatacttcaatttgcttactttaaattacctc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38286930 |
cggcaaatccctctttaacctatctcttaattatttgtttaattaactaccaactatataactttgcatatacttcaatttgcttactttaaattacctc |
38287029 |
T |
|
| Q |
401 |
atctctaatttctcaacactcattccatagtatgtatatcattttctctctattttctttgtatcttatcatcaacatatt |
481 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38287030 |
atctctaatttctcaacactcattccatagtatgtatatcattttctctctattttctttgtatcttatcatcaacatatt |
38287110 |
T |
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