View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3185_low_8 (Length: 460)
Name: NF3185_low_8
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_low_8 |
 |  |
|
| [»] scaffold0341 (1 HSPs) |
 |  |  |
|
| [»] scaffold0180 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 444
Target Start/End: Complemental strand, 38286693 - 38286266
Alignment:
| Q |
14 |
tcatcagaccgccagggtcacgatagcaaagggttgatcatgatagattggtatttgaaaatgatctcaaatatgaattgtatgattctcctcagtccaa |
113 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38286693 |
tcatcagatcgccagggtcacgatagcaaagggttgatcatgatagattggtatttgaaaatgatctcaaatatgaattgtatgattctcctcagtccaa |
38286594 |
T |
 |
| Q |
114 |
tcacacgatatacgatatatagttttcctcctatgattt-tggtttcgtaatttcttagtcaacaaagatatttggtttaatggatccaacggtctatct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
38286593 |
tcacacgatatacgatatatagttttcctcgtatgatttatggtttcgtaatttcttagtcaacaaagatatttggcttaatggatccaatggtct---- |
38286498 |
T |
 |
| Q |
213 |
tagacattttaggttaaatttaaaagagagggatgaaattgactgacggaagcatatttgagggaccaaaatgtaacttttattaaataagggattaaga |
312 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38286497 |
tagacattttaagttaaatttaaaagagagggacgaaattgactgacggaagcatatttgagggaccaaaatgtaacttttattaaataagggattaaaa |
38286398 |
T |
 |
| Q |
313 |
cgaaacctaaaaattaattaagggaccaaatatctaattaaggcaaaatattttgacatttcaatttttcaaggtacattcaatggtttattttttctct |
412 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
38286397 |
cgaaacctgaaaattaattaagggaccaaatatctaattaaggcaaaatattttgacatttcaatttttcaaggcacattcaatggtttattttttcttt |
38286298 |
T |
 |
| Q |
413 |
atatctctctttcgatcagatcaccaacttat |
444 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
38286297 |
atatctctcttccgatcagatcaccaacttat |
38286266 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 339
Target Start/End: Original strand, 30935008 - 30935136
Alignment:
| Q |
211 |
cttagacattttaggttaaatttaaaagagagggatgaaattgactgacggaagcatatttgagggaccaaaatgtaacttttattaaataagggattaa |
310 |
Q |
| |
|
|||||| |||||| |||||| |||| | | | ||| ||||||||| | |||||||| ||| |||||||||| | ||||||||||||| ||||| || || |
|
|
| T |
30935008 |
cttagatattttaagttaaaattaacataaaatgatcaaattgactaatggaagcatgtttaagggaccaaagtataacttttattaattaaggaatcaa |
30935107 |
T |
 |
| Q |
311 |
gacgaaacctaaaaattaattaagggacc |
339 |
Q |
| |
|
|||||||| ||||||||||||||||| |
|
|
| T |
30935108 |
agtgaaacctataaattaattaagggacc |
30935136 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 354
Target Start/End: Original strand, 19919808 - 19919914
Alignment:
| Q |
248 |
aaattgactgacggaagcatatttgagggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaatatct |
347 |
Q |
| |
|
||||||||| || |||||| |||| ||||| ||||| | || ||||||||| ||||||| || ||||||||| |||||||||||||||||||| | | |
|
|
| T |
19919808 |
aaattgactaacagaagcacatttaagggaacaaaacgaaatttttattaattaagggaccaaaacgaaacctgcgaattaattaagggaccaaatgtgt |
19919907 |
T |
 |
| Q |
348 |
aattaag |
354 |
Q |
| |
|
||||||| |
|
|
| T |
19919908 |
aattaag |
19919914 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 343
Target Start/End: Complemental strand, 6508788 - 6508707
Alignment:
| Q |
262 |
aagcatatttgagggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaat |
343 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||| || | || || | ||||||||||||||| |||||||| ||||| |
|
|
| T |
6508788 |
aagcatatttgagggaccaaaacgtaacttttaataattaggagaccaaaatgaaacctaaaaattatttaagggatcaaat |
6508707 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 28757024 - 28757103
Alignment:
| Q |
275 |
ggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaatatctaattaag |
354 |
Q |
| |
|
|||||| ||||||||||||||||| || |||| || | |||||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
28757024 |
ggaccagaatgtaacttttattaattaggggaccaaaataaaacctgaaaattaattaagggatcaaatgtctaattaag |
28757103 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 204 - 354
Target Start/End: Complemental strand, 9558987 - 9558837
Alignment:
| Q |
204 |
ggtctatcttagacattttaggttaaatttaaaagagagggatgaaattgactgacggaagcatatttgagggaccaaaatgtaacttttattaaataag |
303 |
Q |
| |
|
|||| ||| |||||||||| ||||||| |||| | ||| || |||||| || || ||||||||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
9558987 |
ggtccatcatagacatttttggttaaaattaatggtgagagaccaaattggctaacagaagcatatttaagggaccaaaacgtaacttttattaattaag |
9558888 |
T |
 |
| Q |
304 |
ggattaagacgaaacctaaaaattaattaagggaccaaatatctaattaag |
354 |
Q |
| |
|
| | || |||||||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
9558887 |
gaaacaaagtgaaacctataaattaattaaggcaccaaatatgtaattaag |
9558837 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 353
Target Start/End: Original strand, 9560863 - 9560968
Alignment:
| Q |
248 |
aaattgactgacggaagcatatttgagggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaatatct |
347 |
Q |
| |
|
|||||| || ||||||||| |||| |||||||||| ||||||||| |||| ||||||| || ||||||| |||||||||| |||||||||||| | |
|
|
| T |
9560863 |
aaattggcttacggaagcaaatttaagggaccaaatcgtaacttttgttaattaagggaccaaagtgaaacctgtaaattaattatgggaccaaatatgt |
9560962 |
T |
 |
| Q |
348 |
aattaa |
353 |
Q |
| |
|
|||||| |
|
|
| T |
9560963 |
aattaa |
9560968 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 24541661 - 24541623
Alignment:
| Q |
248 |
aaattgactgacggaagcatatttgagggaccaaaatgt |
286 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
24541661 |
aaattgactgacgaaagcatatttaagggaccaaaatgt |
24541623 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 39383888 - 39383819
Alignment:
| Q |
273 |
agggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaa |
342 |
Q |
| |
|
||||||||||| | |||||||| ||| ||||||| || |||||||| |||||| | ||||||||||||| |
|
|
| T |
39383888 |
agggaccaaaacgaaacttttaataattaagggaccaaaacgaaaccaaaaaataagttaagggaccaaa |
39383819 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 45057624 - 45057555
Alignment:
| Q |
273 |
agggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaa |
342 |
Q |
| |
|
||||||||||| | |||||||| || |||||||| || |||||||| |||||| | ||||||||||||| |
|
|
| T |
45057624 |
agggaccaaaacgaaacttttaatagttaagggatcaaaacgaaaccaaaaaataagttaagggaccaaa |
45057555 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 53694113 - 53694198
Alignment:
| Q |
268 |
atttgagggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaatatctaattaa |
353 |
Q |
| |
|
|||| ||||||||||| |||||||||||| |||||| || |||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
53694113 |
atttaagggaccaaaacaaaacttttattaatcaagggaccaaaacgaaacctaaaaattaattaagggaccaaatgtataattaa |
53694198 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 351
Target Start/End: Original strand, 1752507 - 1752646
Alignment:
| Q |
212 |
ttagacattttaggttaaatttaaaagagagggatgaaattgactgacggaagcatatttgagggaccaaaatgtaacttttattaaataagggattaag |
311 |
Q |
| |
|
||||||||||| | ||||| |||| | |||| || |||||| ||||| ||||||||||| || ||||||| | |||||||||||| | | |||||| |
|
|
| T |
1752507 |
ttagacattttcgattaaaattaacaaagagagaccaaattggctgacagaagcatatttttggaaccaaaacgcaacttttattaattgggagattaaa |
1752606 |
T |
 |
| Q |
312 |
acgaaacctaaaaattaattaagggaccaaatatctaatt |
351 |
Q |
| |
|
|| |||||| |||| |||||||||||| |||| ||||||| |
|
|
| T |
1752607 |
acaaaacctgaaaaataattaagggacaaaatctctaatt |
1752646 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 354
Target Start/End: Complemental strand, 17593687 - 17593581
Alignment:
| Q |
248 |
aaattgactgacggaagcatatttgagggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaatatct |
347 |
Q |
| |
|
||||||||| ||||||| |||||| ||||| |||| |||||||||||||| || || | || | ||||||| ||||||||| ||||| ||||| | | |
|
|
| T |
17593687 |
aaattgactaacggaagtatatttaggggactaaaacgtaacttttattaattagggaaccaaaatgaaacctgcaaattaattcagggatcaaatgtat |
17593588 |
T |
 |
| Q |
348 |
aattaag |
354 |
Q |
| |
|
||||||| |
|
|
| T |
17593587 |
aattaag |
17593581 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 342
Target Start/End: Original strand, 6889017 - 6889086
Alignment:
| Q |
273 |
agggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaa |
342 |
Q |
| |
|
||||||||||||| |||||||| || ||||||| ||| |||||||| |||| | | ||||||||||||| |
|
|
| T |
6889017 |
agggaccaaaatgaaacttttaatagttaagggactaaaacgaaacccaaaagtaagttaagggaccaaa |
6889086 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 342
Target Start/End: Original strand, 10286545 - 10286614
Alignment:
| Q |
273 |
agggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaa |
342 |
Q |
| |
|
||||||||||| | |||||||| || |||||||| || |||||||| |||||| | ||||||||||||| |
|
|
| T |
10286545 |
agggaccaaaacgaaacttttaatagttaagggatcaaaacgaaaccaaaaaataagttaagggaccaaa |
10286614 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 343
Target Start/End: Complemental strand, 2810 - 2729
Alignment:
| Q |
262 |
aagcatatttgagggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaat |
343 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||| || | || || | ||||||||||||||| |||||||| ||||| |
|
|
| T |
2810 |
aagcatatttgagggaccaaaacgtaacttttaataattaggagaccaaaatgaaacctaaaaattatttaagggatcaaat |
2729 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 41119787 - 41119854
Alignment:
| Q |
287 |
aacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaatatctaattaag |
354 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| | ||||||||||| |||| ||||||| |||||||| |
|
|
| T |
41119787 |
aacttttattaaataagggaccaagatgaaacttgaaaattaattaggggatcaaatatgtaattaag |
41119854 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 342
Target Start/End: Original strand, 18904985 - 18905054
Alignment:
| Q |
273 |
agggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaa |
342 |
Q |
| |
|
||||||||||| | |||||||| ||| |||||||| || |||||||| |||||| | ||||||||||||| |
|
|
| T |
18904985 |
agggaccaaaacgaaacttttaataattaagggatcaaaacgaaaccaaaaaataagttaagggaccaaa |
18905054 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 354
Target Start/End: Complemental strand, 41118539 - 41118458
Alignment:
| Q |
273 |
agggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaatatctaattaag |
354 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||| ||||| | ||||||| ||| | |||| ||||| ||||||| |
|
|
| T |
41118539 |
agggatcaaaatgtaacttttattaaataagggaccaagatgaaacttgaaaattatttaggagacctaatatgcaattaag |
41118458 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 345
Target Start/End: Complemental strand, 26134952 - 26134825
Alignment:
| Q |
217 |
cattttaggttaaatttaaaagagagggatgaaattgactgacggaagcatatttgagggaccaaaatgtaacttttattaaataagggattaagacgaa |
316 |
Q |
| |
|
||||| |||||||| |||| ||||||||| || ||| || || || ||||||| ||| || |||||| |||||||||||| ||||||| || || || |
|
|
| T |
26134952 |
catttcaggttaaaattaacagagagggaccaacttggctaacataatcatatttaaggaac-aaaatgaaacttttattaattaagggacaaaaacaaa |
26134854 |
T |
 |
| Q |
317 |
acctaaaaattaattaagggaccaaatat |
345 |
Q |
| |
|
| || ||||||||||||||||||||||| |
|
|
| T |
26134853 |
atctttaaattaattaagggaccaaatat |
26134825 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 26892547 - 26892478
Alignment:
| Q |
273 |
agggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaa |
342 |
Q |
| |
|
||||||||||| | |||||||| || |||||||| || |||||||| |||||| | ||||||||||||| |
|
|
| T |
26892547 |
agggaccaaaacgaaacttttaatagttaagggatcaaaacgaaaccaaaaaataagttaagggaccaaa |
26892478 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 26897986 - 26897917
Alignment:
| Q |
273 |
agggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaa |
342 |
Q |
| |
|
||||||||||| | |||||||| || |||||||| || |||||||| |||||| | ||||||||||||| |
|
|
| T |
26897986 |
agggaccaaaacgaaacttttaatagttaagggatcaaaacgaaaccaaaaaataagttaagggaccaaa |
26897917 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0180 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0180
Description:
Target: scaffold0180; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 342
Target Start/End: Original strand, 18692 - 18761
Alignment:
| Q |
273 |
agggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaa |
342 |
Q |
| |
|
||||||||||| | |||||||| || |||||||| || |||||||| |||||| | ||||||||||||| |
|
|
| T |
18692 |
agggaccaaaacgaaacttttaatagttaagggatcaaaacgaaaccaaaaaataagttaagggaccaaa |
18761 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 342
Target Start/End: Original strand, 3318013 - 3318082
Alignment:
| Q |
273 |
agggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaa |
342 |
Q |
| |
|
||||||||||| | |||||||| || ||||||| || |||||||| |||||| ||||||||||||||| |
|
|
| T |
3318013 |
agggaccaaaacgaaacttttaatagttaagggaccaaaacgaaaccaaaaaataaattaagggaccaaa |
3318082 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 342
Target Start/End: Original strand, 21524632 - 21524701
Alignment:
| Q |
273 |
agggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaa |
342 |
Q |
| |
|
||||||||||||| |||||||| || ||||||| || |||||||| |||||| | ||||||||||||| |
|
|
| T |
21524632 |
agggaccaaaatgaaacttttaatagttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaa |
21524701 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 1156047 - 1155978
Alignment:
| Q |
273 |
agggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaa |
342 |
Q |
| |
|
||||||||||||| |||||||| || ||||||| || |||||||| |||||| | ||||||||||||| |
|
|
| T |
1156047 |
agggaccaaaatgaaacttttaatagttaagggaccaaaacgaaaccaaaaaataagttaagggaccaaa |
1155978 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 11846347 - 11846387
Alignment:
| Q |
314 |
gaaacctaaaaattaattaagggaccaaatatctaattaag |
354 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
11846347 |
gaaacctgtaaattaattaagggaccaaatatataattaag |
11846387 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 6098482 - 6098413
Alignment:
| Q |
273 |
agggaccaaaatgtaacttttattaaataagggattaagacgaaacctaaaaattaattaagggaccaaa |
342 |
Q |
| |
|
||||||||||||| |||||||| || |||||| || |||||||| |||||| ||||||||||||||| |
|
|
| T |
6098482 |
agggaccaaaatgaaacttttaatagtaaagggaccaaaacgaaaccaaaaaataaattaagggaccaaa |
6098413 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University