View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_low_9 (Length: 438)
Name: NF3185_low_9
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 17327488 - 17327910
Alignment:
| Q |
1 |
agacctctaaaacctttatgatacgcccataattatgattgtggaccgcaatttagaactaagtccctcgactcaagctttcttctccttaactggtgac |
100 |
Q |
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| T |
17327488 |
agacctctaaaacttttatgatacgcccataattatgattgtggaccgcaatttagaacaaagtccctcgactcaagctttcttctccttaactggtgac |
17327587 |
T |
|
| Q |
101 |
ataaatagaaaccgataaaccatagcagcagaactagcaccaattaaaggacatatccaaaaaacataaaattgctcccaagtattgtgcttattgttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17327588 |
ataaatagaaaccgataaaccatagcagcagaactagcaccaattaaaggacatatccaaaaaacataaaattgctcccaagtattgtgcttattgttca |
17327687 |
T |
|
| Q |
201 |
tataagcccaaccaaatgcattagcagggttcatagaaggtccagtataaccagaaccaattataaccaaaaccaaagtagccacagaaagcaaataaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
17327688 |
tataagcccaaccaaatgcattagcagggttcatagaaggtccagtgtagccagaacctataataaccaaaaccaaagtagccacagaaagcaaataaac |
17327787 |
T |
|
| Q |
301 |
cttgaaccaaggatttttagggcccttaagcataacaagaagaataacaaagttatgagtaaaagtcaaaaccccttcagcaatagcacctgtatgcaaa |
400 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17327788 |
cttcaaccaaggatttttaggacccttaagcataacaagaagaataacaaagttatgagtaaaagtcaaaaccccttcagcaatagcacctgtatgcaaa |
17327887 |
T |
|
| Q |
401 |
tcaaccttcaaagaaggaccttt |
423 |
Q |
| |
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|||||||||||||| |||||||| |
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| T |
17327888 |
tcaaccttcaaagatggaccttt |
17327910 |
T |
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