View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3187_high_2 (Length: 489)

Name: NF3187_high_2
Description: NF3187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3187_high_2
NF3187_high_2
[»] chr1 (16 HSPs)
chr1 (20-479)||(34142153-34142616)
chr1 (66-146)||(30202817-30202897)
chr1 (210-256)||(10356197-10356243)
chr1 (210-248)||(10841901-10841939)
chr1 (210-256)||(12213994-12214040)
chr1 (210-256)||(15382833-15382879)
chr1 (210-256)||(17651394-17651440)
chr1 (210-256)||(28832185-28832231)
chr1 (73-119)||(30496412-30496458)
chr1 (210-268)||(19620577-19620637)
chr1 (210-251)||(27172741-27172782)
chr1 (210-251)||(30279639-30279680)
chr1 (210-251)||(32209857-32209898)
chr1 (212-256)||(17339218-17339262)
chr1 (212-256)||(27785982-27786026)
chr1 (210-258)||(28712547-28712595)
[»] chr4 (20 HSPs)
chr4 (60-153)||(4124791-4124884)
chr4 (210-256)||(7371562-7371608)
chr4 (73-161)||(16527841-16527929)
chr4 (206-258)||(27537745-27537797)
chr4 (105-161)||(43870981-43871037)
chr4 (210-249)||(6459945-6459984)
chr4 (207-250)||(9196211-9196254)
chr4 (210-249)||(24837494-24837533)
chr4 (206-256)||(11949777-11949827)
chr4 (210-256)||(19124636-19124682)
chr4 (210-256)||(24885814-24885860)
chr4 (210-256)||(40070982-40071028)
chr4 (210-256)||(43034356-43034402)
chr4 (212-249)||(2422701-2422738)
chr4 (99-152)||(21867801-21867854)
chr4 (99-152)||(21923662-21923715)
chr4 (210-251)||(35021486-35021527)
chr4 (210-251)||(40847086-40847127)
chr4 (210-251)||(47007321-47007362)
chr4 (211-247)||(39146644-39146680)
[»] chr2 (22 HSPs)
chr2 (206-268)||(15427689-15427753)
chr2 (70-159)||(22010077-22010166)
chr2 (207-251)||(9547428-9547472)
chr2 (210-249)||(8761585-8761624)
chr2 (212-251)||(19159944-19159983)
chr2 (210-256)||(2256972-2257018)
chr2 (206-244)||(7276629-7276667)
chr2 (210-256)||(16204831-16204877)
chr2 (206-256)||(19549433-19549483)
chr2 (76-114)||(28750433-28750471)
chr2 (210-256)||(33063987-33064033)
chr2 (210-256)||(34977205-34977251)
chr2 (206-256)||(36359311-36359361)
chr2 (210-251)||(9964492-9964533)
chr2 (208-249)||(10991541-10991582)
chr2 (210-251)||(22523031-22523072)
chr2 (74-123)||(26211999-26212048)
chr2 (210-251)||(37119277-37119318)
chr2 (210-251)||(40967390-40967431)
chr2 (207-251)||(5168598-5168642)
chr2 (81-117)||(12450931-12450967)
chr2 (212-256)||(12599879-12599923)
[»] chr7 (18 HSPs)
chr7 (73-176)||(17759153-17759256)
chr7 (210-251)||(429197-429238)
chr7 (210-267)||(8883554-8883611)
chr7 (207-250)||(39043753-39043796)
chr7 (210-256)||(30793060-30793106)
chr7 (206-256)||(47342448-47342498)
chr7 (210-251)||(3672571-3672612)
chr7 (210-251)||(5317307-5317348)
chr7 (210-251)||(22991410-22991451)
chr7 (214-259)||(23413057-23413102)
chr7 (210-251)||(28200404-28200445)
chr7 (210-251)||(32315224-32315265)
chr7 (206-251)||(32855517-32855562)
chr7 (210-251)||(35142168-35142209)
chr7 (210-259)||(48065203-48065252)
chr7 (209-249)||(15015241-15015281)
chr7 (70-146)||(28752726-28752800)
chr7 (210-250)||(47960897-47960937)
[»] chr8 (14 HSPs)
chr8 (210-256)||(40795378-40795424)
chr8 (210-251)||(17062358-17062399)
chr8 (210-251)||(17585959-17586000)
chr8 (204-256)||(1877676-1877728)
chr8 (210-256)||(2554226-2554272)
chr8 (209-266)||(7987732-7987790)
chr8 (210-256)||(17898080-17898126)
chr8 (214-256)||(24195254-24195296)
chr8 (210-256)||(27718908-27718954)
chr8 (210-256)||(32421570-32421616)
chr8 (210-256)||(39433411-39433457)
chr8 (210-251)||(10982727-10982768)
chr8 (210-251)||(13357460-13357501)
chr8 (211-256)||(29546895-29546940)
[»] chr6 (9 HSPs)
chr6 (210-256)||(13496117-13496163)
chr6 (210-249)||(24212560-24212599)
chr6 (210-251)||(361755-361796)
chr6 (204-249)||(6799635-6799680)
chr6 (210-251)||(12904336-12904377)
chr6 (210-251)||(28951400-28951441)
chr6 (212-248)||(2445302-2445338)
chr6 (215-251)||(3373400-3373436)
chr6 (210-265)||(18256884-18256940)
[»] chr5 (18 HSPs)
chr5 (210-256)||(13864345-13864391)
chr5 (105-170)||(17750866-17750931)
chr5 (212-256)||(20721053-20721097)
chr5 (208-251)||(31159428-31159471)
chr5 (210-256)||(8545003-8545049)
chr5 (210-256)||(13796331-13796377)
chr5 (210-256)||(18589881-18589927)
chr5 (210-256)||(41650953-41650999)
chr5 (92-125)||(2576875-2576908)
chr5 (210-251)||(5001556-5001597)
chr5 (210-259)||(11720895-11720944)
chr5 (210-251)||(16076432-16076473)
chr5 (210-251)||(17046335-17046376)
chr5 (210-251)||(20927640-20927681)
chr5 (61-110)||(25021127-25021176)
chr5 (210-251)||(33369432-33369473)
chr5 (210-259)||(33645700-33645749)
chr5 (210-251)||(39610360-39610401)
[»] chr3 (13 HSPs)
chr3 (210-255)||(5941309-5941354)
chr3 (209-246)||(42784957-42784994)
chr3 (210-249)||(33404229-33404268)
chr3 (210-256)||(7824808-7824854)
chr3 (210-256)||(10843795-10843841)
chr3 (210-256)||(19468452-19468498)
chr3 (210-256)||(38130973-38131019)
chr3 (215-256)||(1111855-1111896)
chr3 (210-251)||(8942018-8942059)
chr3 (206-251)||(29631183-29631228)
chr3 (211-256)||(49975819-49975864)
chr3 (210-251)||(51882219-51882260)
chr3 (208-248)||(39100438-39100478)
[»] scaffold0118 (1 HSPs)
scaffold0118 (210-256)||(45413-45459)


Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 20 - 479
Target Start/End: Complemental strand, 34142616 - 34142153
Alignment:
Q  20 gtatcaacattgaaaacatatatctataaatgtttcttttatttttgtcatcaaatgtgtttttta-ttggttaatttagtccataaaattattaacaaa 118  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||    
T  34142616 gtatcgacattgaaaacatatatctataaatgtttcttttatttttgtcatcaaatatgtttttttgttggttaatttagtccataaaattattaacaaa 34142517  T
Q  119 agatacaataaggatgtgtttgcaatttcaatacatctagagattacagtgacaacgttacgcttatttagatatgaaaatggta-tactcatgagctta 217  Q
    |||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  | ||||||||||||    
T  34142516 agatacaataaggatacgtttgcaatttcaatacatctagagattacggtgacaacgttacgcttatttagatatgaaaatggttgtgctcatgagctta 34142417  T
Q  218 actcagttgatatgcacaatacataatatatgcatggtcgg-gttcaaatctgagccnnnnnnn-tatgaaaatggttgtttactcattgtactatctct 315  Q
     |||||||| |||||||||||||||||||||||| ||| || |||| ||||||||||        |||||||||||||||||||||||||||||||||||    
T  34142416 gctcagttggtatgcacaatacataatatatgcaaggttggagttcgaatctgagccaaaaaaaatatgaaaatggttgtttactcattgtactatctct 34142317  T
Q  316 aatatgctctttgtcgtttgttgatattaccatcttgccctcattctaattttgcactcatgcatgggctgattaatttagtgattataaacacatttcc 415  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34142316 aatatgctctttgtcgtttgttgatattaccatcttgccctcgttctaattttgcactcatgcatggactgattaatttagtgattataaacacatttcc 34142217  T
Q  416 actattattttcctagctcctaattattctcacatttgactaaatttagtgagtacggtctctg 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34142216 actattattttcctagctcctaattattctcacatttgactaaatttagtgagtacggtctctg 34142153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 30202817 - 30202897
Alignment:
Q  66 gtcatcaaatgtgttttttattggttaatttagtccataaaattattaacaaaagatacaataaggatgtgtttgcaattt 146  Q
    ||||| |||||||||||| ||| || |||||||| |||||||||| ||||||||||  || ||| ||| ||||||||||||    
T  30202817 gtcattaaatgtgtttttcatttgtcaatttagttcataaaattactaacaaaagaggcactaaagatttgtttgcaattt 30202897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 10356243 - 10356197
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  10356243 tgagcttaactcagttggtatggacaatgcataatatatgcacggtc 10356197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 10841901 - 10841939
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatat 248  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  10841901 tgagcttaactcagttgatatggacaatgcataatatat 10841939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 12213994 - 12214040
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    |||||||| ||||||||||| | ||||||||||||||||||| ||||    
T  12213994 tgagcttagctcagttgataggaacaatacataatatatgcaaggtc 12214040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 15382879 - 15382833
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    |||||||||||||||||||||| |||||  |||||||||||| ||||    
T  15382879 tgagcttaactcagttgatatgaacaatgtataatatatgcaaggtc 15382833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 17651440 - 17651394
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||| |||||||||| ||||||||||| ||||||| ||||    
T  17651440 tgagcttaactaagttgatatggacaatacataaaatatgcaaggtc 17651394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 28832231 - 28832185
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  28832231 tgagcttaactcagttggtatgaacaatgcataatatatgcaaggtc 28832185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 30496458 - 30496412
Alignment:
Q  73 aatgtgttttttattggttaatttagtccataaaattattaacaaaa 119  Q
    |||||||||||||||| | ||||||||||||||||||| ||| ||||    
T  30496458 aatgtgttttttattgatcaatttagtccataaaattactaataaaa 30496412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 19620577 - 19620637
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc--gggttcaaatct 268  Q
    |||||||| |||||||| || | ||||||||||||||||||| ||||  ||||||||||||    
T  19620577 tgagcttagctcagttggtaaggacaatacataatatatgcaaggtccggggttcaaatct 19620637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 27172782 - 27172741
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    ||||||||||||||||| |||| |||| ||||||||||||||    
T  27172782 tgagcttaactcagttggtatggacaaaacataatatatgca 27172741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 30279680 - 30279639
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||| ||||||||||| | |||||||||||||||||||    
T  30279680 tgagcttagctcagttgataggtacaatacataatatatgca 30279639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 32209898 - 32209857
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||| ||||||||||| | |||||||||||||||||||    
T  32209898 tgagcttacctcagttgataggaacaatacataatatatgca 32209857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 17339218 - 17339262
Alignment:
Q  212 agcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||| |||| ||||||||||||||| ||| ||||    
T  17339218 agcttaactcagttggtatgaacaatacataatataagcaaggtc 17339262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 27786026 - 27785982
Alignment:
Q  212 agcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||| | || ||||||||||||||||||| ||||    
T  27786026 agcttaactcagttggtttgaacaatacataatatatgcaaggtc 27785982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 28712595 - 28712547
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtcgg 258  Q
    ||||| || |||||||| |||||||||| ||||||||||||| ||||||    
T  28712595 tgagcatagctcagttgttatgcacaatgcataatatatgcaaggtcgg 28712547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 4124791 - 4124884
Alignment:
Q  60 atttttgtcatcaaatgtgttttttattggttaatttagtccataaaattattaacaaaagatacaataaggatgtgtttgcaatttcaataca 153  Q
    ||||| ||| ||||||||||||||| ||||| |||||||||||| |||||| ||||||||||  || ||||||||| |||| ||| || |||||    
T  4124791 attttagtcctcaaatgtgttttttgttggtcaatttagtccatgaaattactaacaaaagaggcactaaggatgtatttgtaatatcgataca 4124884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 7371608 - 7371562
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    |||||||||||||||||||| | ||||||||||||||||||| ||||    
T  7371608 tgagcttaactcagttgataaggacaatacataatatatgcaaggtc 7371562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 161
Target Start/End: Original strand, 16527841 - 16527929
Alignment:
Q  73 aatgtgttttttattggttaatttagtccataaaattattaacaaaagatacaataaggatgtgtttgcaatttcaatacatctagaga 161  Q
    |||||||| ||| ||| | |||||||| ||||||||||||||  || || ||| |||  |||||||| |||||||||||||| ||||||    
T  16527841 aatgtgttatttgttgatcaatttagttcataaaattattaatgaaggagacactaataatgtgtttacaatttcaatacatttagaga 16527929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 27537745 - 27537797
Alignment:
Q  206 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtcgg 258  Q
    ||||||||||||||||| ||| |||| ||||| ||||||||||||| ||||||    
T  27537745 ctcatgagcttaactcaattggtatggacaatgcataatatatgcaaggtcgg 27537797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 43870981 - 43871037
Alignment:
Q  105 aaattattaacaaaagatacaataaggatgtgtttgcaatttcaatacatctagaga 161  Q
    |||||| ||||||||  ||||| |||||||||||||||||||||||| || ||||||    
T  43870981 aaattactaacaaaaactacaaaaaggatgtgtttgcaatttcaatatatttagaga 43871037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 6459984 - 6459945
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatg 249  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  6459984 tgagcttaactcagttgatatggacaatgcataatatatg 6459945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 9196211 - 9196254
Alignment:
Q  207 tcatgagcttaactcagttgatatgcacaatacataatatatgc 250  Q
    |||||||||||||| |||||||||| ||||| ||||||||||||    
T  9196211 tcatgagcttaacttagttgatatggacaatgcataatatatgc 9196254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 24837533 - 24837494
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatg 249  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  24837533 tgagcttaacttagttgatatgaacaatacataatatatg 24837494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 11949827 - 11949777
Alignment:
Q  206 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    |||||||||||| |||||||| |||| ||||| ||||||||||||| ||||    
T  11949827 ctcatgagcttagctcagttggtatggacaatgcataatatatgcaaggtc 11949777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 19124682 - 19124636
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||||||   ||||||||||||||||||| ||||    
T  19124682 tgagcttaactcagttgataaagacaatacataatatatgcaaggtc 19124636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 24885860 - 24885814
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  24885860 tgagcttaactcagttggtatggacaatacataaaatatgcaaggtc 24885814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 40071028 - 40070982
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  40071028 tgagcttaactcagttggtatgaacaatgcataatatatgcaaggtc 40070982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 43034402 - 43034356
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  43034402 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 43034356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 2422738 - 2422701
Alignment:
Q  212 agcttaactcagttgatatgcacaatacataatatatg 249  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  2422738 agcttaactcagttgatatggacaatatataatatatg 2422701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 21867801 - 21867854
Alignment:
Q  99 tccataaaattattaacaaaagatacaataaggatgtgtttgcaatttcaatac 152  Q
    |||||||||||| ||||||||||   | || |||||||||||||||||||||||    
T  21867801 tccataaaattactaacaaaagaggaactagggatgtgtttgcaatttcaatac 21867854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 21923662 - 21923715
Alignment:
Q  99 tccataaaattattaacaaaagatacaataaggatgtgtttgcaatttcaatac 152  Q
    |||||||||||| ||||||||||   | || |||||||||||||||||||||||    
T  21923662 tccataaaattactaacaaaagaggaactagggatgtgtttgcaatttcaatac 21923715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 35021527 - 35021486
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||| ||||||||||||| ||||||||||| |||||||    
T  35021527 tgagcttagctcagttgatatggacaatacataaaatatgca 35021486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 40847127 - 40847086
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  40847127 tgagcttaactcagttgatagagacaatacataatatatgca 40847086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 47007362 - 47007321
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    ||||||||||||||||| || | |||||||||||||||||||    
T  47007362 tgagcttaactcagttgttagggacaatacataatatatgca 47007321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 39146644 - 39146680
Alignment:
Q  211 gagcttaactcagttgatatgcacaatacataatata 247  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  39146644 gagcttaactcagttgatatggacaatgcataatata 39146680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 15427689 - 15427753
Alignment:
Q  206 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc--gggttcaaatct 268  Q
    |||||||||||| ||||||||||||| |||||| |||||||||||| ||||  ||||||||||||    
T  15427689 ctcatgagcttagctcagttgatatggacaatatataatatatgcaaggtctagggttcaaatct 15427753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 22010166 - 22010077
Alignment:
Q  70 tcaaatgtgttttttattggttaatttagtccataaaattattaacaaaagatacaataaggatgtgtttgcaatttcaatacatctaga 159  Q
    ||||||||||||||| || || ||||| ||||||||||||| ||||||||||     || |||||||||||||||||  |||||| ||||    
T  22010166 tcaaatgtgttttttgttcgtcaatttcgtccataaaattactaacaaaagaggttctagggatgtgtttgcaatttagatacatttaga 22010077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 9547472 - 9547428
Alignment:
Q  207 tcatgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||    
T  9547472 tcataagcttaactcagttgatatggacaatgcataatatatgca 9547428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 8761624 - 8761585
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatg 249  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  8761624 tgagcttaactcagttggtatggacaatacataatatatg 8761585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 19159944 - 19159983
Alignment:
Q  212 agcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  19159944 agcttaactcagttgatatgaacaatgcataatatatgca 19159983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 2256972 - 2257018
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  2256972 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 2257018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 7276667 - 7276629
Alignment:
Q  206 ctcatgagcttaactcagttgatatgcacaatacataat 244  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  7276667 ctcatgagcttaactcagttgatagggacaatacataat 7276629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 16204877 - 16204831
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    |||||||||||||||||||| | ||||| ||||||||||||| ||||    
T  16204877 tgagcttaactcagttgataaggacaatgcataatatatgcaaggtc 16204831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 19549433 - 19549483
Alignment:
Q  206 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    |||||||||||||||||| || |||| ||||| ||||||||||||| ||||    
T  19549433 ctcatgagcttaactcagctggtatgaacaatgcataatatatgcaaggtc 19549483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 28750433 - 28750471
Alignment:
Q  76 gtgttttttattggttaatttagtccataaaattattaa 114  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  28750433 gtgtttttcattggttaatttagttcataaaattattaa 28750471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 33063987 - 33064033
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    |||||||| ||||||||||||| ||||| ||||||||||||| ||||    
T  33063987 tgagcttagctcagttgatatggacaatgcataatatatgcaaggtc 33064033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 34977205 - 34977251
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  34977205 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 34977251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 36359311 - 36359361
Alignment:
Q  206 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    |||||||||||||||| |||||| || ||||| ||||||||||||| ||||    
T  36359311 ctcatgagcttaactcggttgatttggacaatgcataatatatgcaaggtc 36359361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 9964492 - 9964533
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||| ||||||||||||||||| ||||||| |||||||||||    
T  9964492 tgagtttaactcagttgatatgaacaatacgtaatatatgca 9964533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 10991541 - 10991582
Alignment:
Q  208 catgagcttaactcagttgatatgcacaatacataatatatg 249  Q
    ||||||||||||||||||| || | |||||||||||||||||    
T  10991541 catgagcttaactcagttggtaaggacaatacataatatatg 10991582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 22523072 - 22523031
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||| |||||||| |||| |||||||||||||||||||    
T  22523072 tgagcttagctcagttggtatggacaatacataatatatgca 22523031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 26211999 - 26212048
Alignment:
Q  74 atgtgttttttattggttaatttagtccataaaattattaacaaaagata 123  Q
    ||||||||||| || || |||||||||||||||||||  |||||||||||    
T  26211999 atgtgttttttgttagtcaatttagtccataaaattacaaacaaaagata 26212048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 37119318 - 37119277
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||| ||||||||||||||||| ||||| |||||||||||||    
T  37119318 tgagtttaactcagttgatatgaacaatgcataatatatgca 37119277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 40967431 - 40967390
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||||||||||||||| | ||||| |||||||||||||    
T  40967431 tgagcttaactcagttgataaggacaatgcataatatatgca 40967390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 5168642 - 5168598
Alignment:
Q  207 tcatgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    ||||||||||||||||||||||| | | ||| |||||||||||||    
T  5168642 tcatgagcttaactcagttgatagggataatgcataatatatgca 5168598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 12450931 - 12450967
Alignment:
Q  81 ttttattggttaatttagtccataaaattattaacaa 117  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  12450931 ttttgttggttaatttagtccataaaattactaacaa 12450967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 12599923 - 12599879
Alignment:
Q  212 agcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||  |||| ||||||||||||||||||| ||||    
T  12599923 agcttaactcagttagtatggacaatacataatatatgcaaggtc 12599879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 17759153 - 17759256
Alignment:
Q  73 aatgtgttttttattggttaatttagtccataaaattattaacaaaagatacaataaggatgtgtttgcaatttcaatacatctagagattacagtgaca 172  Q
    |||||||||||| || || |||| ||||||||  |||||||||||||||  || |||||  |||||||||||||| |||||| ||  ||||| |||| ||    
T  17759153 aatgtgttttttgtttgtcaattaagtccatagtattattaacaaaagaggcactaaggtcgtgtttgcaatttcgatacatttaaggattatagtggca 17759252  T
Q  173 acgt 176  Q
    ||||    
T  17759253 acgt 17759256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 429238 - 429197
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  429238 tgagcttaactcagttgatatggataatacataatatatgca 429197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 8883554 - 8883611
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtcgggttcaaatc 267  Q
    ||||||||||||||||| |||| ||||| |||||||| |||| |||||||||| ||||    
T  8883554 tgagcttaactcagttggtatggacaatgcataatatgtgcaaggtcgggttcgaatc 8883611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 39043753 - 39043796
Alignment:
Q  207 tcatgagcttaactcagttgatatgcacaatacataatatatgc 250  Q
    |||||||||||||||||||| |||| ||||| ||||||||||||    
T  39043753 tcatgagcttaactcagttggtatggacaatgcataatatatgc 39043796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 30793106 - 30793060
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| |||| ||||| |||| |||||||||||||    
T  30793106 tgagcttaactcagttggtatggacaatgcatagtatatgcatggtc 30793060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 47342498 - 47342448
Alignment:
Q  206 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||||||| | || ||||| ||||||||||||| ||||    
T  47342498 ctcatgagcttaactcagttggtttggacaatgcataatatatgcaaggtc 47342448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 3672612 - 3672571
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||| ||| ||||||||||||| |||||||||||||||||||    
T  3672612 tgagtttagctcagttgatatggacaatacataatatatgca 3672571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 5317348 - 5317307
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||||||||||||||||| | ||| |||||||||||||    
T  5317348 tgagcttaactcagttgatatggaaaatgcataatatatgca 5317307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 22991451 - 22991410
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  22991451 tgagcttaactcagttggtatggacaatgcataatatatgca 22991410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 23413102 - 23413057
Alignment:
Q  214 cttaactcagttgatatgcacaatacataatatatgcatggtcggg 259  Q
    ||||||||||||| |||| ||||| ||||||||||||| |||||||    
T  23413102 cttaactcagttggtatggacaatgcataatatatgcaaggtcggg 23413057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 28200445 - 28200404
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    ||||||||||||||||| || | |||||||||||||||||||    
T  28200445 tgagcttaactcagttggtaggaacaatacataatatatgca 28200404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 32315224 - 32315265
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||||||||||||||| | ||| |||||||||||||||    
T  32315224 tgagcttaactcagttgataaggacattacataatatatgca 32315265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 32855517 - 32855562
Alignment:
Q  206 ctcatgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    ||||||| |||||||||||||||||| | ||| |||||||||||||    
T  32855517 ctcatgaacttaactcagttgatatgaataatgcataatatatgca 32855562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 35142209 - 35142168
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||| ||||||||||||| ||||| |||||||||||||    
T  35142209 tgagcttagctcagttgatatggacaatgcataatatatgca 35142168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 48065203 - 48065252
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtcggg 259  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||| |||||||    
T  48065203 tgagcttaactcaattggtatggacaattcataatatatgcaaggtcggg 48065252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 15015241 - 15015281
Alignment:
Q  209 atgagcttaactcagttgatatgcacaatacataatatatg 249  Q
    ||||||||||||||||||||| | ||||| |||||||||||    
T  15015241 atgagcttaactcagttgataagaacaatgcataatatatg 15015281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 28752800 - 28752726
Alignment:
Q  70 tcaaatgtgttttttattggttaatttagtccataaaattattaacaaaagatacaataaggatgtgtttgcaattt 146  Q
    ||||||||||||||| ||| | ||||| | |||||||||||||||||||| | ||| ||  ||||||||||||||||    
T  28752800 tcaaatgtgtttttt-ttgttcaattttg-ccataaaattattaacaaaatagacattagagatgtgtttgcaattt 28752726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 47960897 - 47960937
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgc 250  Q
    ||||||||||||| |||||| | ||||||||||||||||||    
T  47960897 tgagcttaactcaattgataaggacaatacataatatatgc 47960937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 40795378 - 40795424
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||||    
T  40795378 tgagcttaactcagttggtatgaacaatacataatatatgcaaggtc 40795424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 17062399 - 17062358
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  17062399 tgagcttaactcagttgatatagacaatacataatatatgca 17062358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 17585959 - 17586000
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  17585959 tgagcttaactcagttgatatagacaatacataatatatgca 17586000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 1877728 - 1877676
Alignment:
Q  204 tactcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||| |||||||||||||||||||||  ||||| ||||||||||||| ||||    
T  1877728 tactcgtgagcttaactcagttgatatagacaatgcataatatatgcaaggtc 1877676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 2554272 - 2554226
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    |||||||| ||||||||||||| ||||||||||| ||||||| ||||    
T  2554272 tgagcttagctcagttgatatggacaatacataaaatatgcaaggtc 2554226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 7987790 - 7987732
Alignment:
Q  209 atgagcttaactcagttgatatgcacaatacataatatatgcatggt-cgggttcaaat 266  Q
    |||||||||||||| ||| || | ||||||||||||||||||| ||| |||||||||||    
T  7987790 atgagcttaactcaattgctaaggacaatacataatatatgcaaggtccgggttcaaat 7987732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 17898080 - 17898126
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| |||| |||| |||||||||||||| ||||    
T  17898080 tgagcttaactcagttggtatggacaaaacataatatatgcaaggtc 17898126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 256
Target Start/End: Original strand, 24195254 - 24195296
Alignment:
Q  214 cttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||    
T  24195254 cttagctcagttgatatgaacaatacataatatatgcaaggtc 24195296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 27718954 - 27718908
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    |||||||| ||||||||||||| ||||| ||||||||||||| ||||    
T  27718954 tgagcttagctcagttgatatggacaatgcataatatatgcaaggtc 27718908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 32421570 - 32421616
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| |||| |||||| |||||||||||| ||||    
T  32421570 tgagcttaactcagttggtatggacaatatataatatatgcaaggtc 32421616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 39433411 - 39433457
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    |||||||| ||||||||||||| ||||||||||| ||||||| ||||    
T  39433411 tgagcttagctcagttgatatgaacaatacataaaatatgcaaggtc 39433457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 10982727 - 10982768
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    ||||||||||||||||| |||| |||||| ||||||||||||    
T  10982727 tgagcttaactcagttggtatggacaatatataatatatgca 10982768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 13357501 - 13357460
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  13357501 tgagcttaactcagttggtatggacaatgcataatatatgca 13357460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 29546895 - 29546940
Alignment:
Q  211 gagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||||| | |||||| |||||||||||| ||||    
T  29546895 gagcttaactcagttgatagggacaatagataatatatgcaaggtc 29546940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 13496117 - 13496163
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    |||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  13496117 tgagcttaactcagttgatatgaacaatgcataatatatgcaaggtc 13496163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 24212599 - 24212560
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatg 249  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  24212599 tgagcttaactcagttgatatggacaatgcataatatatg 24212560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 361755 - 361796
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  361755 tgagcttaactcagttggtatggacaatgcataatatatgca 361796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 6799635 - 6799680
Alignment:
Q  204 tactcatgagcttaactcagttgatatgcacaatacataatatatg 249  Q
    ||||| |||||||||||||||| | ||| |||||||||||||||||    
T  6799635 tactcgtgagcttaactcagttaacatggacaatacataatatatg 6799680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 12904377 - 12904336
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||| ||||||||||||| ||||| |||||||||||||    
T  12904377 tgagcttacctcagttgatatgaacaatgcataatatatgca 12904336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 28951400 - 28951441
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  28951400 tgagcttaactcagttggtatgaacaatgcataatatatgca 28951441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 2445302 - 2445338
Alignment:
Q  212 agcttaactcagttgatatgcacaatacataatatat 248  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  2445302 agcttaactcagttgatatgaacaatgcataatatat 2445338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 3373436 - 3373400
Alignment:
Q  215 ttaactcagttgatatgcacaatacataatatatgca 251  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  3373436 ttaactcagttgatatggacaatgcataatatatgca 3373400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 18256884 - 18256940
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggt-cgggttcaaa 265  Q
    |||||||| ||||||||||| | ||||| ||||||||||||| ||| ||||||||||    
T  18256884 tgagcttagctcagttgataaggacaatgcataatatatgcaaggtccgggttcaaa 18256940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 13864345 - 13864391
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||||    
T  13864345 tgagcttaactcagttggtatgaacaatacataatatatgcaaggtc 13864391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 17750866 - 17750931
Alignment:
Q  105 aaattattaacaaaagatacaataaggatgtgtttgcaatttcaatacatctagagattacagtga 170  Q
    ||||||| ||||||||| ||| |||  || |||||||||||||||||||| ||||||||| |||||    
T  17750866 aaattatcaacaaaagagacactaaaaatatgtttgcaatttcaatacatttagagattatagtga 17750931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 20721053 - 20721097
Alignment:
Q  212 agcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||| |||| ||||||||||||||||||| ||||    
T  20721053 agcttaactcagttggtatggacaatacataatatatgcaaggtc 20721097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 31159428 - 31159471
Alignment:
Q  208 catgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    ||||||||||||||||||||||   |||||||||||||||||||    
T  31159428 catgagcttaactcagttgataaagacaatacataatatatgca 31159471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 8545049 - 8545003
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    |||||||||||||||||||| | ||||| ||||||||||||| ||||    
T  8545049 tgagcttaactcagttgataaggacaatgcataatatatgcaaggtc 8545003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 13796331 - 13796377
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||| |||||| ||||| ||||||||||||| ||||    
T  13796331 tgagcttaactcagtcgatatgaacaatgcataatatatgcaaggtc 13796377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 18589927 - 18589881
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  18589927 tgagcttaactcagttggtatgaacaatgcataatatatgcaaggtc 18589881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 41650999 - 41650953
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  41650999 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 41650953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 2576875 - 2576908
Alignment:
Q  92 aatttagtccataaaattattaacaaaagataca 125  Q
    |||||||||||||||||||||||| |||||||||    
T  2576875 aatttagtccataaaattattaacgaaagataca 2576908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 5001556 - 5001597
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||||||| ||||||| | |||||||||||||||||||    
T  5001556 tgagcttaactcggttgataaggacaatacataatatatgca 5001597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 11720895 - 11720944
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtcggg 259  Q
    ||||||||||||||||| || | ||||| ||||||||||||| |||||||    
T  11720895 tgagcttaactcagttggtagggacaatgcataatatatgcaaggtcggg 11720944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 16076432 - 16076473
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||||||||| ||||||| ||||| |||||||||||||    
T  16076432 tgagcttaactcagctgatatggacaatgcataatatatgca 16076473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 17046335 - 17046376
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  17046335 tgagcttaactcagttggtatggacaatgcataatatatgca 17046376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 20927640 - 20927681
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||| |||||||| |||| |||||||||||||||||||    
T  20927640 tgagcttagctcagttggtatggacaatacataatatatgca 20927681  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 25021127 - 25021176
Alignment:
Q  61 tttttgtcatcaaatgtgttttttattggttaatttagtccataaaatta 110  Q
    |||||||| ||||||||||||||  ||||| |||||||||||||| ||||    
T  25021127 tttttgtcttcaaatgtgtttttcgttggtcaatttagtccataatatta 25021176  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 33369473 - 33369432
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    ||||||||||||||||| |||| |||||||||||| ||||||    
T  33369473 tgagcttaactcagttggtatgaacaatacataatgtatgca 33369432  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 33645749 - 33645700
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtcggg 259  Q
    ||||||||||||||||| |||| |||||  |||||||||||| |||||||    
T  33645749 tgagcttaactcagttggtatggacaatgtataatatatgcaaggtcggg 33645700  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 39610401 - 39610360
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||| ||||||||||||| ||||| |||||||||||||    
T  39610401 tgagcttagctcagttgatatggacaatgcataatatatgca 39610360  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 5941354 - 5941309
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggt 255  Q
    ||||||||||||||||| |||| ||||| |||||||||||||||||    
T  5941354 tgagcttaactcagttggtatgaacaatgcataatatatgcatggt 5941309  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 42784957 - 42784994
Alignment:
Q  209 atgagcttaactcagttgatatgcacaatacataatat 246  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  42784957 atgagcttaactcagttgatatggacaatacataatat 42784994  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 33404229 - 33404268
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatg 249  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  33404229 tgagcttagctcagttgatatggacaatacataatatatg 33404268  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 7824808 - 7824854
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    |||| ||||||||||||||||  ||||||||||||||||||| ||||    
T  7824808 tgagtttaactcagttgatatagacaatacataatatatgcaaggtc 7824854  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 10843841 - 10843795
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| |||| | ||||||||||||||||| ||||    
T  10843841 tgagcttaactcagttggtatgaataatacataatatatgcaaggtc 10843795  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 19468452 - 19468498
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  19468452 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 19468498  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 38131019 - 38130973
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  38131019 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 38130973  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 1111896 - 1111855
Alignment:
Q  215 ttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||| | ||||||||||||||||||| ||||    
T  1111896 ttaactcagttgatagggacaatacataatatatgcaaggtc 1111855  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 8942018 - 8942059
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  8942018 tgagcttaactcagttggtatgaacaatgcataatatatgca 8942059  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 29631183 - 29631228
Alignment:
Q  206 ctcatgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    |||||||||||| |||||||| |||| ||||| |||||||||||||    
T  29631183 ctcatgagcttagctcagttggtatggacaatgcataatatatgca 29631228  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 49975864 - 49975819
Alignment:
Q  211 gagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    |||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  49975864 gagcttaactcagttgttatggacaatgcataatatatgcaaggtc 49975819  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 51882260 - 51882219
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgca 251  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  51882260 tgagcttaactcagttggtatggacaatgcataatatatgca 51882219  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 39100478 - 39100438
Alignment:
Q  208 catgagcttaactcagttgatatgcacaatacataatatat 248  Q
    |||||||||||||||||||||| | ||||| ||||||||||    
T  39100478 catgagcttaactcagttgataagaacaatgcataatatat 39100438  T

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Target: scaffold0118 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 45413 - 45459
Alignment:
Q  210 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 256  Q
    ||||||||||||||||| | || ||||||||||||||||||| ||||    
T  45413 tgagcttaactcagttggtttggacaatacataatatatgcaaggtc 45459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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