View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3187_low_1 (Length: 592)
Name: NF3187_low_1
Description: NF3187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3187_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 8 - 352
Target Start/End: Original strand, 42286260 - 42286607
Alignment:
| Q |
8 |
acatcatcatcctcatcctcaatcaactactacttctgctacttcctcagctccttcaaccacagttcctcaaaagaaaagaaggaatcaacctggaaca |
107 |
Q |
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| T |
42286260 |
acatcatcatcctcatcctcaatcaactactacttctgctacttcctcagctccttcaaccacagttcctcaaaagaaaagaaggaatcaacctggaaca |
42286359 |
T |
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| Q |
108 |
ccaagcaagtagcttaattatttttattttcattattacttaaaacttcaacatgcacacacccttctcgaa---nnnnnnnnnnnnnnnnnngtattat |
204 |
Q |
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| T |
42286360 |
ccaagcaagtagcttaattatttttattttcattattacttaaagcttcaacatgcacacacccttctcgaatttttttttttttttttttttgtattat |
42286459 |
T |
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| Q |
205 |
tttctcaaaaaacaagcataatgaaaccctaaatcatgaacatgagttagggctctgaatttcttttacaaaaaagctatataagaactatgtttagggt |
304 |
Q |
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| T |
42286460 |
tttctcaaaaaacaagcataatgaaaccctaaatcatgaacatgagttagggctctgaatttcttttacaaaaaagctatataagaactatgtttagggt |
42286559 |
T |
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| Q |
305 |
gcatgaagtctcctccaattttattctcaaaagcatatgagacttcgg |
352 |
Q |
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| T |
42286560 |
gcatgcagtctcctccaattttattctcaaaagcatatgagacttcgg |
42286607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 395 - 576
Target Start/End: Original strand, 42286650 - 42286831
Alignment:
| Q |
395 |
actactattaccatgagtttgtggcttttaaatggaaaaaataacaataaaacatagttcttcatttcatggtgcatatatattcaattatgaatacttc |
494 |
Q |
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| T |
42286650 |
actactattaccatgagtttgtggcttttaaatggaaaaaataacaataaaacatagttcttcatttcatggtgcatatatattcaattatgaatacttc |
42286749 |
T |
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| Q |
495 |
ttttgatgttnnnnnnnctataattttataatatttttcttatacnnnnnnntatataatattttgttgttttggcattttt |
576 |
Q |
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| T |
42286750 |
ttttgatgttaaaaaaactagaattttataatatttttcttatacaaaaaaatatataatattttgttgttttggcattttt |
42286831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 12805411 - 12805364
Alignment:
| Q |
71 |
agttcctcaaaagaaaagaaggaatcaacctggaacaccaagcaagta |
118 |
Q |
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| T |
12805411 |
agttcctcagaaaaaaagaagaaatcaacctggaacaccatgcaagta |
12805364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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