View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3187_low_3 (Length: 402)
Name: NF3187_low_3
Description: NF3187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3187_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 18621315 - 18620930
Alignment:
| Q |
1 |
caaagggtgctctattcggtacaaatagaatagccttgaattcaagctggccctccacagagaaatgcttcacagccaagtgttcttcccagtcattggt |
100 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18621315 |
caaagggtgctcttttcgggacaaatagaatagccttgaattcaagctggccctccacagagaaatgcttcacagccaagtgttcttcccagtcattggt |
18621216 |
T |
|
| Q |
101 |
taggctcttgtagaaagcagcatattcatccttggtgatctcttctggcttgcgcagccagattggcttctgcttgttgatgagttcccactcatgagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18621215 |
taggctcttgtagaaagcagcatattcatccttggtgatctcttctggcttgcgcagccagattggcttctgcttgttgatgagttcccactcatgagaa |
18621116 |
T |
|
| Q |
201 |
acctccttaatcttctttttcttcttggcatctttctccttgtcctcatcaacttcctcgaccacaccttcttcttccttcttgggctcgtcatcttcat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
18621115 |
acctccttaatcttctttttcttcttggcatctttctccttgtcctcatcaacttcctcgaccacaccttcttcttccttcttgggctcatcatcttcat |
18621016 |
T |
|
| Q |
301 |
catcactgatctctttctcagtagtcttttcagtccaaaggtagattgggtaactaatgaattcagagtgcttcttcacaagatct |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18621015 |
catcactgatctctttctcagtagtcttttcagtccaaaggtagattgggtagctaatgaattcagagtgcttcttcacaagatct |
18620930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 29 - 385
Target Start/End: Original strand, 45061580 - 45061936
Alignment:
| Q |
29 |
aatagccttgaattcaagctggccctccacagagaaatgcttcacagccaagtgttcttcccagtcattggttaggctcttgtagaaagcagcatattca |
128 |
Q |
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|
|||||| ||||| ||||| || ||||||||||| || ||||| |||||||||||||||||||| ||||| || | |||||||||||| | |||||| ||| |
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| T |
45061580 |
aatagctttgaactcaagttgaccctccacagaaaagtgcttaacagccaagtgttcttcccaatcattagtaatgctcttgtagaatgaagcatactca |
45061679 |
T |
|
| Q |
129 |
tccttggtgatctcttctggcttgcgcagccagattggcttctgcttgttgatgagttcccactcatgagaaacctccttaatcttctttttcttcttgg |
228 |
Q |
| |
|
||||| || |||||||||||||| |||| ||| ||||| ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
45061680 |
tcctttgtaatctcttctggcttacgcaaccaaattggtttctgtttgttgatttgttgccactcatgagaaacctccttaatcttctttttcttctttg |
45061779 |
T |
|
| Q |
229 |
catctttctccttgtcctcatcaacttcctcgaccacaccttcttcttccttcttgggctcgtcatcttcatcatcactgatctctttctcagtagtctt |
328 |
Q |
| |
|
|||||||||||| | ||||| || ||||| || | ||||| |||||||||||||| || ||||| ||||||||||| |||||||||||||| ||||| |
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| T |
45061780 |
aatctttctccttcccttcatctacatcctcaacatctccttcctcttccttcttgggttcatcatcctcatcatcactaatctctttctcagttgtctt |
45061879 |
T |
|
| Q |
329 |
ttcagtccaaaggtagattgggtaactaatgaattcagagtgcttcttcacaagatc |
385 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||| || |||||||||||||| |
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|
| T |
45061880 |
ctcagtccagaggtagattgggtagctaatgaactcagaatgtttcttcacaagatc |
45061936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 42165962 - 42166289
Alignment:
| Q |
1 |
caaagggtgctctattcggtacaaatagaatagccttgaattcaagctggccctccacagagaaatgcttcacagccaagtgttcttcccagtcattggt |
100 |
Q |
| |
|
|||| |||||||| || |||||||| |||| |||||| || || | ||| ||||| || ||||| ||||| |||||||| || |||||||| |||||||| |
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| T |
42165962 |
caaaaggtgctctcttgggtacaaagagaacagccttaaactccaactgaccctcaactgagaagtgcttaacagccaaatgctcttcccaatcattggt |
42166061 |
T |
|
| Q |
101 |
taggctcttgtagaaagcagcatattcatccttggtgatctcttctggcttgcgcagccagattggcttctgcttgttgatgagttcccactcatgagaa |
200 |
Q |
| |
|
|| |||||||| ||||||||||| |||||||| || ||||| || ||||| | || ||| || || || |||||||| | | ||| |||| ||| |
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|
| T |
42166062 |
gagactcttgtaaaaagcagcatactcatcctttgtaatctcctcgggcttcctcatccaaataggtttttgcttgttcaccaaagaccattcattagac |
42166161 |
T |
|
| Q |
201 |
acctccttaatcttctttttcttcttggcatctttctccttgtcctcatcaacttcctcgaccacaccttcttcttccttcttgggctcgtcatcttcat |
300 |
Q |
| |
|
|||||||||||||| || || ||||| | || || || || |||||||| |||||||| ||| ||| || ||||||||||| || ||||| |||| |
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|
| T |
42166162 |
acctccttaatctttttctttttcttctcttccttttctttctcctcatctacttcctcaaccttaccctcctcttccttcttctcttcctcatcctcat |
42166261 |
T |
|
| Q |
301 |
catcactgatctctttctcagtagtctt |
328 |
Q |
| |
|
||||| |||||||||||| ||||||| |
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| T |
42166262 |
catcagaaatctctttctcaatagtctt |
42166289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 42176603 - 42176930
Alignment:
| Q |
1 |
caaagggtgctctattcggtacaaatagaatagccttgaattcaagctggccctccacagagaaatgcttcacagccaagtgttcttcccagtcattggt |
100 |
Q |
| |
|
|||| |||||||| || |||||||| |||| |||||| || || | ||| ||||| || ||||| ||||| |||||||| || |||||||| |||||||| |
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|
| T |
42176603 |
caaaaggtgctctcttgggtacaaagagaacagccttaaactccaactgaccctcaactgagaagtgcttaacagccaaatgctcttcccaatcattggt |
42176702 |
T |
|
| Q |
101 |
taggctcttgtagaaagcagcatattcatccttggtgatctcttctggcttgcgcagccagattggcttctgcttgttgatgagttcccactcatgagaa |
200 |
Q |
| |
|
|| |||||||| ||||||||||| |||||||| || ||||| || ||||| | || ||| || || || |||||||| | | ||| |||| ||| |
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| T |
42176703 |
gagactcttgtaaaaagcagcatactcatcctttgtaatctcctcgggcttcctcatccaaataggtttttgcttgttcaccaaagaccattcattagac |
42176802 |
T |
|
| Q |
201 |
acctccttaatcttctttttcttcttggcatctttctccttgtcctcatcaacttcctcgaccacaccttcttcttccttcttgggctcgtcatcttcat |
300 |
Q |
| |
|
|||||||||||||| || || ||||| | || || || || |||||||| |||||||| ||| ||| || ||||||||||| || ||||| |||| |
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|
| T |
42176803 |
acctccttaatctttttctttttcttctcttccttttctttctcctcatctacttcctcaaccttaccctcctcttccttcttctcttcctcatcctcat |
42176902 |
T |
|
| Q |
301 |
catcactgatctctttctcagtagtctt |
328 |
Q |
| |
|
||||| |||||||||||| ||||||| |
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|
| T |
42176903 |
catcagaaatctctttctcaatagtctt |
42176930 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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