View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3187_low_4 (Length: 346)
Name: NF3187_low_4
Description: NF3187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3187_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 37793266 - 37793606
Alignment:
| Q |
1 |
agaatccaattcttgatgacaatgaccttcattttatggatgcatacatagaga------------atttctggtcagagccatatatgattgacagttc |
88 |
Q |
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| T |
37793266 |
agaatccaattcttgatgacaatgaccttcattttatggatgcatacatagagaatttgagtgagaatttctggtcagagccatatatgattgacagttc |
37793365 |
T |
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| Q |
89 |
acatgtccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttca |
188 |
Q |
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| T |
37793366 |
acatttccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttca |
37793465 |
T |
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| Q |
189 |
caaccatcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaatcctttaatggatgcattatttcctgcagagt |
288 |
Q |
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| T |
37793466 |
caaccatcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaatcctttaatggatgcattatttcctgcagagt |
37793565 |
T |
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| Q |
289 |
gtgaacatgaatactttagttctgtgtacgatgtagaattt |
329 |
Q |
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| T |
37793566 |
gtgaacatgaatactttagttctgtgtacgatgtagaattt |
37793606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 51 - 257
Target Start/End: Original strand, 37792860 - 37793066
Alignment:
| Q |
51 |
gagaatttctggtcagagccatatatgattgacagttcacatgtccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagt |
150 |
Q |
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| T |
37792860 |
gagaatttctggacagagccatatatgatagacaattcatatgtcccccataatcaccctacaatggaagaaaccaagaaacttgaaggagtttttgaga |
37792959 |
T |
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| Q |
151 |
acaacattgatcccaatagtgttagtccagtatcttcacaaccatcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcaca |
250 |
Q |
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| T |
37792960 |
acaatatcgatcccaatattacgagtccactatcttcacaaccattttcaagtggattctcttgcataacaacagaaaatttcgcttccactatatcaca |
37793059 |
T |
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| Q |
251 |
tgaaaat |
257 |
Q |
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| T |
37793060 |
tgaaaat |
37793066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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