View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3187_low_5 (Length: 238)
Name: NF3187_low_5
Description: NF3187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3187_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45479516 - 45479738
Alignment:
| Q |
1 |
tttttagaatcttagttggaatatgtgcaacttacgaccaaattttgaattaccaccgtcttctcataaaatcagatgtgtttaattgaggcgtcatacc |
100 |
Q |
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| T |
45479516 |
tttttagaatcttagttggaatatgtgcaacttgcgaccaaattttgaattaccaccgtcttctcataaaatcagatgtgtttaattgaggcgtcatacc |
45479615 |
T |
|
| Q |
101 |
cccacactcacgctaaattttcagttacaaaatactataaaataaaattgttttttagtttggtttgggtgataattaaaattattaagcaataaaatat |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45479616 |
cccacactcacgctaaattttcatttacaaaatactataaaataaaattgttttttagtttggtttgggtgataattaaaattattaagcaataaaatat |
45479715 |
T |
|
| Q |
201 |
agactttttggagtacaattttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
45479716 |
agactttttggagtacaattttg |
45479738 |
T |
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