View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3187_low_6 (Length: 237)
Name: NF3187_low_6
Description: NF3187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3187_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 18621390 - 18621605
Alignment:
| Q |
6 |
gaggaactcataccggagtaccttggatttgtgaaaggtgttgtcgattctgatgacttgccacttaacatttctcgtgagatgctgcaacagaacaaga |
105 |
Q |
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| T |
18621390 |
gaggaactcatacctgagtatcttggatttgtgaaaggtgttgtcgattctgatgacttgccacttaacatctctcgtgagatgttgcaacagaacaaga |
18621489 |
T |
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| Q |
106 |
ttttgaaggttatcaggaagaatcttgtgaaaaagtgtattgaaatgttcaatgagatttctgagaacaaggaagattacaacaaattctatgatgcttt |
205 |
Q |
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| T |
18621490 |
tcttgaaggtgattagaaagaatcttgtcaagaaatgcattgaaatgttcaatgagattgctgagaacaaagaagattacaacaaattctatgatgcttt |
18621589 |
T |
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| Q |
206 |
ctcaaagaatttgaaa |
221 |
Q |
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| T |
18621590 |
ctcaaagaatttgaaa |
18621605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 45061480 - 45061259
Alignment:
| Q |
3 |
tgtgaggaactcataccggagtaccttggatttgtgaaaggtgttgtcgattctgatgacttgccacttaacatttctcgtgagatgctgcaacagaaca |
102 |
Q |
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| T |
45061480 |
tgtgaagagctcattcctgagtaccttggatttgtcaagggtgtagttgactctgatgatttgccactcaacatctctcgtgagatgctgcagcagaata |
45061381 |
T |
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| Q |
103 |
agattttgaaggttatcaggaagaatcttgtgaaaaagtgtattgaaatgttcaatgagatttctgagaacaaggaagattacaacaaattctatgatgc |
202 |
Q |
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| T |
45061380 |
agattttgaaggtgattaggaagaaccttgtgaagaagtgcattgagatgttcaatgagattgctgaaaataaggaagattacaacaaattctatgatgc |
45061281 |
T |
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| Q |
203 |
tttctcaaagaatttgaaattg |
224 |
Q |
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| T |
45061280 |
tttctccaagaatttgaaattg |
45061259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 42165860 - 42165673
Alignment:
| Q |
33 |
tttgtgaaaggtgttgtcgattctgatgacttgccacttaacatttctcgtgagatgctgcaacagaacaagattttgaaggttatcaggaagaatcttg |
132 |
Q |
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| T |
42165860 |
tttgtgaagggtattgtggactctgaagatctcccacttaacatttcaagagagatgcttcaacagaacaagattctcaaggtcataaggaagaacttgg |
42165761 |
T |
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| Q |
133 |
tgaaaaagtgtattgaaatgttcaatgagatttctgagaacaaggaagattacaacaaattctatgatgctttctcaaagaatttgaa |
220 |
Q |
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| T |
42165760 |
tgaagaagtgccttgagcttttctttgaaattgctgagaacaaggaagactacaacaagttctatgaggccttctctaagaacttgaa |
42165673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 42176501 - 42176314
Alignment:
| Q |
33 |
tttgtgaaaggtgttgtcgattctgatgacttgccacttaacatttctcgtgagatgctgcaacagaacaagattttgaaggttatcaggaagaatcttg |
132 |
Q |
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| T |
42176501 |
tttgtgaagggtattgtggactctgaagatctcccacttaacatttcaagagagatgcttcaacagaacaagattctcaaggtcataaggaagaacttgg |
42176402 |
T |
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| Q |
133 |
tgaaaaagtgtattgaaatgttcaatgagatttctgagaacaaggaagattacaacaaattctatgatgctttctcaaagaatttgaa |
220 |
Q |
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| T |
42176401 |
tgaagaagtgccttgagcttttctttgaaattgctgagaacaaggaagactacaacaagttctatgaggccttctctaagaacttgaa |
42176314 |
T |
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