View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3188_high_1 (Length: 588)
Name: NF3188_high_1
Description: NF3188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3188_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 171 - 548
Target Start/End: Original strand, 28267232 - 28267610
Alignment:
| Q |
171 |
gggggcatataagacaataaacaaggcgcgagtgcgcatattcgcggcgcagtcctcgcgataatttaaaagaagcgccattttt-attttccnnnnnnn |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28267232 |
gggggcatataagacaataaacaaggcgcgagtgcgcatattcgcggcgcagtcctcgcgataatttaaaagaagcgccattttttattttccaaaaaaa |
28267331 |
T |
|
| Q |
270 |
ggaaaatgtacgatctacggcttgcgtaatcgcattaccacgcgtcagcaatgcaacggtgattgacacgaacttcaacatacgaatatcctttccgaaa |
369 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28267332 |
ggaaaatgtacgatctacggcttgcgtaaacgcattaccacgcgtcagcaatgcaacggtgatcaacacgaacttcaacatacgaatatcctttccgaaa |
28267431 |
T |
|
| Q |
370 |
tgtcaatcccttattggtccacgtggcatccctcttaaaaccactagtggttttctactctgggtttcactccaccaactaaaagcagtttcatcacttt |
469 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28267432 |
tgtcaatctcttattggtccacgtggtatccctctaaaaaccactagtggttttcttctctgggtttcactccaccaaccaaaagcagtttcatcacttt |
28267531 |
T |
|
| Q |
470 |
ccttatatagctacacactgatgcgttttcagtcgctttgtctgttataacaaccaacgcgttcctcacccgtcgtaag |
548 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28267532 |
ccttatatagctacacactgatgcgttttcagtcgctttgtctgttataacaaccaacgcgttcctcacccgtcgtaag |
28267610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 28267082 - 28267184
Alignment:
| Q |
20 |
aacgagaagaaatagagttatcaaaagaggtggctgcttacaagaaggagaagaaaattcttttagtaaattaaatgtaattaataatattattacaagc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28267082 |
aacgagaagaaatagagttatcaaaagag-tggctgcttacaagaaggagaagaaaattcttttagtaaattaaatgtaattaataatattattacaagc |
28267180 |
T |
|
| Q |
120 |
acac |
123 |
Q |
| |
|
|||| |
|
|
| T |
28267181 |
acac |
28267184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University