View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3188_high_5 (Length: 227)
Name: NF3188_high_5
Description: NF3188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3188_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1229473 - 1229253
Alignment:
| Q |
1 |
cactttaaattttcaaaatggattttggtaatcctgagttcgactacgatacaaaataaataaaatttgaccaataattatttcagttaggactcgaatt |
100 |
Q |
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| T |
1229473 |
cactttaaattttcaaaattgattttggtaatcctgagttcgactacgatacaaaacaaataaaatttgaccaacgattattttagttaggactcgaatt |
1229374 |
T |
|
| Q |
101 |
tggattcttcagagtttgaccttcgctaaa-gttcatttgtcatttgaatccaaccatttggtttggtttctaaatgccaaatcaacaattctcaaaaca |
199 |
Q |
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|||||||||| || | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1229373 |
tggattcttcggactc-gaccttcgctaaaagttcatttgtcatttgaatccaaccatttggtttggtttctaaatgccaaatcaacaattcttaaaaca |
1229275 |
T |
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| Q |
200 |
aaagaaaaacacagcatatata |
221 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
1229274 |
aaagaaaaacacagcatatata |
1229253 |
T |
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