View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3188_low_4 (Length: 265)

Name: NF3188_low_4
Description: NF3188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3188_low_4
NF3188_low_4
[»] chr4 (7 HSPs)
chr4 (1-251)||(52791931-52792181)
chr4 (133-172)||(55118764-55118803)
chr4 (133-190)||(6948197-6948254)
chr4 (133-190)||(11160649-11160706)
chr4 (102-179)||(11174639-11174716)
chr4 (102-179)||(11182101-11182178)
chr4 (137-178)||(11932019-11932060)
[»] chr5 (4 HSPs)
chr5 (72-178)||(8991381-8991487)
chr5 (72-178)||(8981876-8981982)
chr5 (128-178)||(35390550-35390600)
chr5 (128-180)||(36686932-36686984)
[»] chr8 (3 HSPs)
chr8 (118-186)||(24412640-24412708)
chr8 (118-184)||(24406502-24406568)
chr8 (138-191)||(24817213-24817266)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 52792181 - 52791931
Alignment:
Q  1 aatttaaatatgttttttcatatattttattcatggcacaaattaagcatttgattgaggtatcacaaacaatcaagcatatgattgagggcgattgagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52792181 aatttaaatatgttttttcatatattttattcatggcacaaattaagcatttgattgaggtatcacaaacaatcaagcatatgattgagggcgattgagc 52792082  T
Q  101 tgacaatggaatacctgttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttccacttccgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52792081 tgacaatggaatacctgttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttccacttccgaa 52791982  T
Q  201 gatcacaaggtatgggacgctgatttcatcaaggaggttaatgtggttatg 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52791981 gatcacaaggtatgggacgctgatttcatcaaggaggttaatgtggttatg 52791931  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 55118764 - 55118803
Alignment:
Q  133 gcaagatcttgacgaaggttattgagtattgtaagaagca 172  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  55118764 gcaagatcttgacgaaggttattgaatactgtaagaagca 55118803  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 6948254 - 6948197
Alignment:
Q  133 gcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttc 190  Q
    ||||| ||||| | ||||||||||||||||| |||||||| ||||| ||| |||||||    
T  6948254 gcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttc 6948197  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 11160649 - 11160706
Alignment:
Q  133 gcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttc 190  Q
    ||||||||||| | | |||||||||| |||| |||||||| ||||| |||||||||||    
T  11160649 gcaagatcttggctatggttattgagcattgcaagaagcatgttgacgctaccagttc 11160706  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 11174639 - 11174716
Alignment:
Q  102 gacaatggaatacctgttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaa 179  Q
    |||| |||||| ||| ||||||| | |||| ||||||||||| | |||||||| |||||||| ||||| || ||||||    
T  11174639 gacactggaatccctattccgaatgtaactggcaagatcttggctaaggttatcgagtattgcaagaaacatgttgaa 11174716  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 11182101 - 11182178
Alignment:
Q  102 gacaatggaatacctgttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaa 179  Q
    |||| |||||| ||| ||||||| | |||| ||||||||||| | |||||||| |||||||| ||||| || ||||||    
T  11182101 gacactggaatccctattccgaatgtaactggcaagatcttggctaaggttatcgagtattgcaagaaacatgttgaa 11182178  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 11932060 - 11932019
Alignment:
Q  137 gatcttgacgaaggttattgagtattgtaagaagcacgttga 178  Q
    ||||||| ||||||||||||||||||| |||||||| |||||    
T  11932060 gatcttggcgaaggttattgagtattgcaagaagcatgttga 11932019  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 8991381 - 8991487
Alignment:
Q  72 atcaagcatatgattgagggcgattgagctgacaatggaatacctgttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagc 171  Q
    |||||||||||||| || |  ||||| ||||||| |||||| ||| |||| ||||  || |||||||||||| ||||||| ||||||||||| |||||||    
T  8991381 atcaagcatatgatcgaagatgattgcgctgacagtggaatccctcttcccaacgttaccagcaagatcttggcgaaggtgattgagtattgcaagaagc 8991480  T
Q  172 acgttga 178  Q
    | |||||    
T  8991481 atgttga 8991487  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 8981876 - 8981982
Alignment:
Q  72 atcaagcatatgattgagggcgattgagctgacaatggaatacctgttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagc 171  Q
    |||||||||||||| || |  ||||| ||||||| |||||| ||| |||| ||||  || || ||||||||| ||||||| ||||||||||| |||||||    
T  8981876 atcaagcatatgatcgaagatgattgcgctgacagtggaatccctcttcccaacgttaccagtaagatcttggcgaaggtgattgagtattgcaagaagc 8981975  T
Q  172 acgttga 178  Q
    | |||||    
T  8981976 atgttga 8981982  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 35390600 - 35390550
Alignment:
Q  128 aactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttga 178  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||| |||||    
T  35390600 aactagcaacatcttggcgaaggttattgagtattgtaaaaagcatgttga 35390550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 36686984 - 36686932
Alignment:
Q  128 aactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaag 180  Q
    ||||||||| |||||| | ||||||||||| |||||||| ||||| |||||||    
T  36686984 aactagcaacatcttggcaaaggttattgaatattgtaaaaagcatgttgaag 36686932  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 24412640 - 24412708
Alignment:
Q  118 ttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctacca 186  Q
    |||| |||| ||| |||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||    
T  24412640 ttccaaacgtaaccagcaagatcttgacaaaggttatcgagtattgtaagaagcatgttgaggctacca 24412708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 24406568 - 24406502
Alignment:
Q  118 ttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctac 184  Q
    |||| |||| ||| |||||||||||| | |||||||| ||||||||||||||||| ||||| |||||    
T  24406568 ttccaaacgtaaccagcaagatcttggcaaaggttatcgagtattgtaagaagcatgttgaggctac 24406502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 24817213 - 24817266
Alignment:
Q  138 atcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttcc 191  Q
    |||||| |||| |||||||||||||| |||||||| ||||| ||||| ||||||    
T  24817213 atcttggcgaaagttattgagtattgcaagaagcatgttgaggctacaagttcc 24817266  T

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