View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_high_1 (Length: 863)
Name: NF3190_high_1
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 555 - 769
Target Start/End: Original strand, 35118019 - 35118233
Alignment:
| Q |
555 |
gcagaaatgtgatgtcagaaaaaggagggaagaaggagaagaagaaaatgaacgcgttattatcctctgtttttctctctttgtcaactttctctaatcg |
654 |
Q |
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| T |
35118019 |
gcagaaatgtgatgtcagaaaaaggagggaagaaggagaagaagaaaatgaacgcgttattatcctctgtttttctctctttgtcaactttctctaatcg |
35118118 |
T |
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| Q |
655 |
tgccacgtggcattcctttgctcnnnnnnnatccctcgtgttgagaccaatataccctttcaaaattttatgattaagcacgatgacagatcacgtcttt |
754 |
Q |
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| T |
35118119 |
tgccacgtggcattcctttgctctttttttatccctcgtgttgagaccaatataccctttcaaaattttatgattaagcacgatgacagatcacgtcttt |
35118218 |
T |
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| Q |
755 |
tattttactactatc |
769 |
Q |
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| T |
35118219 |
tattttactactatc |
35118233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 35117651 - 35117702
Alignment:
| Q |
183 |
ggaggggttttattgtttttctctgtttcgtctttttcccttgtttagattc |
234 |
Q |
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| T |
35117651 |
ggaggggttttattgtttttctctgtttcgtctttttcccttgtttagattc |
35117702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35117468 - 35117509
Alignment:
| Q |
1 |
catcatcacaaagaatgtccattggatctcccaaaccgttgg |
42 |
Q |
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| T |
35117468 |
catcatcacaaagaatgtccattggatctcccaaaccgttgg |
35117509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 426 - 472
Target Start/End: Original strand, 35117891 - 35117936
Alignment:
| Q |
426 |
tacatcaatggctgtaacaggggtaaaatggggaattcagggtcagt |
472 |
Q |
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| T |
35117891 |
tacatcaatggc-gtaacaggggtaaaatggggaattcagggtcagt |
35117936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 780 - 847
Target Start/End: Original strand, 35118266 - 35118332
Alignment:
| Q |
780 |
atttaagaaaaataatttatataactaagattcttttttcttnnnnnnnntgtggaatgagtcaaaat |
847 |
Q |
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| T |
35118266 |
atttaagaaaaataatt-atataaccaagattcttttttcttaaaaaaaatgtggaatgagtcaaaat |
35118332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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