View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_high_10 (Length: 571)
Name: NF3190_high_10
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 180 - 560
Target Start/End: Original strand, 43386290 - 43386668
Alignment:
| Q |
180 |
aataatgcaaaagtgccattatttacgggggactagctacctagcaagtgggatcgatgctgatcttacatatacatacactcatatatgtttatagaga |
279 |
Q |
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| T |
43386290 |
aataatgcaaaagtgccattatttacgggggactagctacctagcaagtgggatcgatgctgatcttacatatacatatactcatatatgtttatagaga |
43386389 |
T |
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| Q |
280 |
aagaataattaattgtcttaactgcagcaaattgaaacatcaacttgctactacttttctctcgattccaggacaaacaaatggaaaccacacatatata |
379 |
Q |
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| T |
43386390 |
aagaataattaattgtcttaaccgcagcaaattgaaacatcaacttgctactacttttctctcgattccaggacaaacaaatggaaaccacacatatata |
43386489 |
T |
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| Q |
380 |
cgctagctcaacaagtagggtttatttaatggtacaccatttagtttgtttgctaattaagcacacaataaatgcatacatacatatatgattgtgattt |
479 |
Q |
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| T |
43386490 |
cgctagctcaacaagtagggtttatttaattgtacaccatttaatttgtttgctaattaagcacacaagaaatgcatacatacatatatgattgtgattt |
43386589 |
T |
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| Q |
480 |
atatatacgtccattaataccatatacagtttataattatgacacaagagtccatatgtcccccctccatcaactagtata |
560 |
Q |
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| T |
43386590 |
atatatacgtccattaaaaccatatacagtttataattatgacacaagagtcc--atgtcccccctccatcaactagtata |
43386668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 43386131 - 43386260
Alignment:
| Q |
18 |
gcatgtatatgagcacatctttaattaacttaataatttaaagaagaagtatttgattaaatattttgttgtttctcaaaaccacctgataagatcaaca |
117 |
Q |
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| T |
43386131 |
gcatgtatatcagcacatctttaattaacttaataatttaaagaagaagtatttgattaaatattttgttgtttctcaacaccacctgataagat---ca |
43386227 |
T |
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| Q |
118 |
acagtcccagtgcacagaatctctctctttcag |
150 |
Q |
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| T |
43386228 |
acagtcccagtgcacagaatctctctctttcag |
43386260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 399
Target Start/End: Original strand, 50122943 - 50122978
Alignment:
| Q |
364 |
aaaccacacatatatacgctagctcaacaagtaggg |
399 |
Q |
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| T |
50122943 |
aaaccacacatatatacgctagctcaacaagtaggg |
50122978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 399
Target Start/End: Complemental strand, 31951435 - 31951404
Alignment:
| Q |
368 |
cacacatatatacgctagctcaacaagtaggg |
399 |
Q |
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| T |
31951435 |
cacacatatatacgctagctcaacaagtaggg |
31951404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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