View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3190_high_12 (Length: 521)
Name: NF3190_high_12
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 11 - 504
Target Start/End: Complemental strand, 4489462 - 4488969
Alignment:
| Q |
11 |
caaagggaatgattatcttcaagctcatacatgttcatgctggtatagttgtcgttcccacaccaagtaatatgattgtttattgtgtttaacaattaac |
110 |
Q |
| |
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| T |
4489462 |
caaagggaatgattatcttcaagctcatacatgttcatgctggtatagttgtcgttcccacaccaagtaatatgattgtttattgtgtttaacaattaat |
4489363 |
T |
|
| Q |
111 |
agnnnnnnnnnnnnnnnnacaatacaaagtaacaattttaggcatttaaaagttgaaaaacattttttctgtaaaatgaagatgcatttgtatcttgaag |
210 |
Q |
| |
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|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4489362 |
agtttttgtttttcttttacaatacaaagtaacaattttatgcatttaaaagttgaaaaacattttttctgtaaaatgaagatgcatttgtatcttgaag |
4489263 |
T |
|
| Q |
211 |
agattggttaatgaattttgatcaccgtcgaagacgtaggaacaatgggccaaactctatgatcaactgttgtgtttttgtgcgtttatttatatgttta |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4489262 |
agattggttaatgaattttgatcaccgtcgaagacgtaggaacaattggccaaactctatgatcaactgttgtgtttttgtgcgtttatttatatgttta |
4489163 |
T |
|
| Q |
311 |
ctttagaaccaggtttgctggtctaacatattatagggctattatgacttatgattggcagtcttgcattctgtatgaaagtcggaacttttatgtttcc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
4489162 |
ctttagaaccaggtttgctggtctaacatattatagggctgttatgacttatgattggcagtctcgcattctgtatgaaagtcagaacttttatgtttcc |
4489063 |
T |
|
| Q |
411 |
cttacttttgttaacatgactcagcctcacaaaaaccgaattttcaggtgaggagaactgcccaagccttataaacacaatttaggtcgcatat |
504 |
Q |
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| T |
4489062 |
cttacttttgttaacatgactcaacctcacaaaaaccgaattttcaggtgaggagaactgcccaagccttataaacacaatttaggtcgcatat |
4488969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 193 - 504
Target Start/End: Complemental strand, 22622683 - 22622372
Alignment:
| Q |
193 |
tgcatttgtatcttgaagagattggttaatgaattttgatcaccgtcgaagacgtaggaacaatgggccaaactctatgatcaactgttgtgtttttgtg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| ||||||||||||||| |
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| T |
22622683 |
tgcatttgtatcttgaagagattggttaatgaattttgatcaccgtcgaagacgtaagaacaattggccgaactctatgatcaattgttgtgtttttgtg |
22622584 |
T |
|
| Q |
293 |
cgtttatttatatgtttactttagaaccaggtttgctggtctaacatattatagggctattatgacttatgattggcagtcttgcattctgtatgaaagt |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22622583 |
cgtttatttatatgtttactttagaaccaggtttgctggtctagcatattgtagggctgctatgacttatgattggcagtcttgcattctgtatgaaagt |
22622484 |
T |
|
| Q |
393 |
cggaacttttatgtttcccttacttttgttaacatgactcagcctcacaaaaaccgaattttcaggtgaggagaactgcccaagccttataaacacaatt |
492 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22622483 |
cagaacttttatgtttcccttacttttgttaacatgactaaacctcacaaaaaccgacttttcaggttaggagaactgcccaagccttataaacacaatt |
22622384 |
T |
|
| Q |
493 |
taggtcgcatat |
504 |
Q |
| |
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|| ||| ||||| |
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|
| T |
22622383 |
tatgtcacatat |
22622372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 193 - 504
Target Start/End: Complemental strand, 14245538 - 14245225
Alignment:
| Q |
193 |
tgcatttgtatcttgaagagattggttaatgaattttgatcaccgtcgaagacgtaggaacaatgggccaaactctatgatcaactgttgtgtttttgtg |
292 |
Q |
| |
|
||||||| ||||||||| |||||||||| || ||||||||||||||||||| ||| || ||| ||| |||||||||||||| |||||||||||| || |
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| T |
14245538 |
tgcatttttatcttgaattgattggttaactaagtttgatcaccgtcgaagacatagcaataatcggcagaactctatgatcaattgttgtgtttttatg |
14245439 |
T |
|
| Q |
293 |
cgtttatttatatgtttactttagaaccaggtttgctggtctaacatattatagggctattatgacttatgattggcagtcttgcattctgtatgaaagt |
392 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
14245438 |
cgtttatttatacgtttactttagaaccaggtttactggtctaacatattccagggctgttatgacttatgattggcagtcttgcattctgtatcaaagt |
14245339 |
T |
|
| Q |
393 |
c--ggaacttttatgtttcccttacttttgttaacatgactcagcctcacaaaaaccgaattttcaggtgaggagaactgcccaagccttataaacacaa |
490 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
14245338 |
cagggaacttttatgtttcccttacttttgctaacatgactcaacctcacaaaaaccgatttttcaggtgaggagaactgcgcaagccttataaacacaa |
14245239 |
T |
|
| Q |
491 |
tttaggtcgcatat |
504 |
Q |
| |
|
||||||| ||||| |
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|
| T |
14245238 |
cttaggtcacatat |
14245225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 14245724 - 14245637
Alignment:
| Q |
18 |
aatgattatcttcaagctcatacatgttcatgctggtatagttgtcgttcccacaccaagtaatatgattgtttattgtgtttaacaa |
105 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14245724 |
aatgattatcttcaagctcatacatgtccatgctggtatagttggcgttcccacatcaagtaatatgattgtttattgtgtttaacaa |
14245637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 193 - 504
Target Start/End: Complemental strand, 6356088 - 6355775
Alignment:
| Q |
193 |
tgcatttgtatcttgaagagattggttaatgaattttgatcaccgtcgaagacgtaggaacaatgggccaaactctatgatcaactgttgtgtttttgtg |
292 |
Q |
| |
|
||||||| ||||||||| |||||||||| || ||||||||||||||||||| ||| || ||| ||| |||||||||||||| |||||||||||| || |
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|
| T |
6356088 |
tgcatttttatcttgaattgattggttaactaagtttgatcaccgtcgaagacatagtaataatcggcagaactctatgatcaattgttgtgtttttttg |
6355989 |
T |
|
| Q |
293 |
cgtttatttatatgtttactttagaaccaggtttgctggtctaacatattatagggctattatgacttatgattggcagtcttgcattctgtatgaaagt |
392 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
6355988 |
cgtttatttatacgtttactttagaaccaggtttactggtctaacatattccagggttgttatgacttatgattggcagtcttgcattctgtatcaaagt |
6355889 |
T |
|
| Q |
393 |
c--ggaacttttatgtttcccttacttttgttaacatgactcagcctcacaaaaaccgaattttcaggtgaggagaactgcccaagccttataaacacaa |
490 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
6355888 |
cagggaacttttatgtttcccttacttttgctaacatgactcaacctcacaaaaatcgatttttcaggtgaggagaactgcgcaagccttataaacacaa |
6355789 |
T |
|
| Q |
491 |
tttaggtcgcatat |
504 |
Q |
| |
|
||||||| ||||| |
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|
| T |
6355788 |
cttaggtcacatat |
6355775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 6356294 - 6356208
Alignment:
| Q |
18 |
aatgattatcttcaagctcatacatgttcatgctggtatagttgtcgttcccacaccaagtaatatgattgtttattgtgtttaaca |
104 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
6356294 |
aatgattatcttcaagctcatacatgtccatgctggtatagttggcgttcccacatcaagtaatatgattgtttattgtgtttaaca |
6356208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 6356182 - 6356135
Alignment:
| Q |
131 |
aatacaaagtaacaattttaggcatttaaaagttgaaaaacatttttt |
178 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||| ||||| |
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|
| T |
6356182 |
aatacaaagtaacaattttttgcatttaaaagttgataaacacttttt |
6356135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 1410843 - 1410687
Alignment:
| Q |
14 |
agggaatgattatcttcaagctcatacatgttcatgctggtatagttgtcgttcccacaccaagtaatatgattgtttattgtgtttaac-aattaacag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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|
| T |
1410843 |
agggaatgattatcttcaagctcatacatgttcatgctggtatagttggcgttcccacaccaagtaatatcattgtttattgtgtttaacaaattaacaa |
1410744 |
T |
|
| Q |
113 |
nnnnnnnnnnnnnnnnacaatacaaagtaacaattttaggcatttaaaagttgaaaa |
169 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1410743 |
tttttgtttttcttttacaatacaaagtaacaattttatgcatttaaaagttgaaaa |
1410687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 345 - 486
Target Start/End: Complemental strand, 1410373 - 1410230
Alignment:
| Q |
345 |
agggctattatgacttatgattggcagtcttgcattctgtatgaaagtc--ggaacttttatgtttcccttacttttgttaacatgactcagcctcacaa |
442 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||| | |||||| ||||||||||| | ||| ||||||||| |||||||||||| |||||||| |
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|
| T |
1410373 |
agggctgttatgacttatgattggcagtcctgcattctgtgtcaaagtcagggaacttttatatatccgttacttttgctaacatgactcaacctcacaa |
1410274 |
T |
|
| Q |
443 |
aaaccgaattttcaggtgaggagaactgcccaagccttataaac |
486 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||| ||||||||||| |
|
|
| T |
1410273 |
aaaccgacttttaaggtgaggagaactgtccaggccttataaac |
1410230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 1410500 - 1410407
Alignment:
| Q |
237 |
gtcgaagacgtaggaacaatgggccaaactctatgatcaactgttgtg-tttttgtgcgtttatttatatgtttactttagaaccaggtttgctg |
330 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||| | ||||| ||||||||| ||||||||||||||||| ||||||||| || ||||| |
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|
| T |
1410500 |
gtcgaagacgtaggaacaattggctgaactctatgatcaatttttgtgttttttgtgcatttatttatatgtttac-ttagaaccaagtgtgctg |
1410407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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