View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_high_13 (Length: 509)
Name: NF3190_high_13
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 11 - 494
Target Start/End: Original strand, 15138199 - 15138682
Alignment:
| Q |
11 |
cataggatagttgtgttttagtctatgagttagcaaactctacatattttcaattataaattccattttctatatgctgatcttgttatgtttctaacat |
110 |
Q |
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| T |
15138199 |
cataggatagttgtgttttagtctatgagttagcaaactctacatattttcaattataaattccattttctatatgctgatcttgttatgtttctaacat |
15138298 |
T |
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| Q |
111 |
ttacagactattcgccatggattggtactatggatgtggaacgaacgatttcgttgtaccgggcgatcaagatttaatggctaggcatccatcaccagaa |
210 |
Q |
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| T |
15138299 |
ttacagactattcaccatggattggtactatggatgtggaacgaacgatttcgttgtaccgggcgatcaagatttaatggctaggcatccatcaccagaa |
15138398 |
T |
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| Q |
211 |
aattggtcaaaatggggaataaatacatctgaaggttacaattcacctaaaaattacatgaccatggattcaaatacaacagaattagaattcaatttca |
310 |
Q |
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| T |
15138399 |
aattggtcaaaatggggaataaatacacctgaaggttacaattcacctaaaaattacatgaccatggattcaaatacaacagaattagaattcaatttca |
15138498 |
T |
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| Q |
311 |
acggtgaaagtttccgtgacggagtcaagttcgaatcatcttcctatgataaagatcaatctagcagttcaagtgtatgtggaggattgactgagcaatc |
410 |
Q |
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| T |
15138499 |
acagtgaaagtttccgtgacggagtcaagttcgaatcatcttcctatgataaagatcaatctagcagttcaagtgtatgtggaggattgactgagcaatc |
15138598 |
T |
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| Q |
411 |
ttttcaacaatcacgtcatcagcatcagcagaatcagcttcaagaactatcatcaagcttcgagcagaccaccgatgacatatt |
494 |
Q |
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| T |
15138599 |
ttttcaacaatcacgtcatcagcatcagcagaatcagcttcaagaactatcatcaagcttcgagcagaccaccgatgacatatt |
15138682 |
T |
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