View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_high_15 (Length: 477)
Name: NF3190_high_15
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 39934002 - 39934455
Alignment:
| Q |
1 |
tatgtcacaaataatctacatcaagaaactgaatttaggaactagattgagagaaaggtactgaagaaattaatgacaatttatgatttctcatctaagt |
100 |
Q |
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| T |
39934002 |
tatgtcacaaataatctacatccagaaactgaatttaggaactagattgagagaaaggtactgaagaaattaatgacaatttatgatttctcatctaagt |
39934101 |
T |
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| Q |
101 |
gaaaatgtgacatcatacatgtatttatagctacatagatgtgtaacagtactctaactaactttctacattggtttactaactgtaactaattacaaca |
200 |
Q |
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| T |
39934102 |
gacaatgtgacatcatacatgtatttatagctacatagatgtgtaacagtactctaactaactttctacattggtttactaactgtaactaattacaaca |
39934201 |
T |
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| Q |
201 |
cgctaactagcctcatcaatgtttgttagatcagtaacttgttgtgcaagtcactaagaattgctacatatcttgacagtctttttcatagaatgtagga |
300 |
Q |
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| T |
39934202 |
cgctaactagcctcatcaatgtttgttagatcagtaacttgttgtgcaagtcactaagaattgctacatatcttgacagtctttttcatagaatgtagga |
39934301 |
T |
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| Q |
301 |
gagaagaacttatcatcattatcacttattccaaccataacaatatcatttatcatcatttcaaatcttcttaaatatcttcatatttgtaagaaataga |
400 |
Q |
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| T |
39934302 |
gagaagaacgtatcatcattatcacttattccaaccataacaatatcatttatcatcatttcaaatcttcttaaatatcttcatatttgtaagaaataga |
39934401 |
T |
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| Q |
401 |
gcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaata |
454 |
Q |
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| T |
39934402 |
gcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaata |
39934455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 369 - 454
Target Start/End: Complemental strand, 39704652 - 39704567
Alignment:
| Q |
369 |
tcttaaatatcttcatatttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaata |
454 |
Q |
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| T |
39704652 |
tcttaaacattttcatacttgtaagaaatagagcacagtaagtaatacacaaagttgatagctccaaacatgaccaacatccaata |
39704567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 380 - 454
Target Start/End: Complemental strand, 39695732 - 39695658
Alignment:
| Q |
380 |
ttcatatttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaata |
454 |
Q |
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| T |
39695732 |
ttcatacttgtaagaaatagagcacaataggtaatacacaaagttgatacctccaaacactactaacatccaata |
39695658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 39928648 - 39928688
Alignment:
| Q |
282 |
tttttcatagaatgtaggagagaagaacttatcatcattat |
322 |
Q |
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| T |
39928648 |
tttttcatagaatgtaggagaaaagaacttattaccattat |
39928688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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