View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3190_high_17 (Length: 461)

Name: NF3190_high_17
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3190_high_17
NF3190_high_17
[»] chr3 (4 HSPs)
chr3 (60-388)||(44187643-44187978)
chr3 (410-447)||(45205341-45205378)
chr3 (411-452)||(51698924-51698965)
chr3 (18-58)||(44187991-44188031)
[»] chr1 (4 HSPs)
chr1 (73-388)||(43095837-43096160)
chr1 (409-452)||(41677289-41677332)
chr1 (409-446)||(15470027-15470064)
chr1 (424-452)||(48470717-48470745)
[»] chr2 (1 HSPs)
chr2 (18-388)||(32726786-32727158)
[»] chr7 (3 HSPs)
chr7 (396-451)||(49069300-49069355)
chr7 (410-451)||(46095015-46095056)
chr7 (409-441)||(3683595-3683627)
[»] chr6 (1 HSPs)
chr6 (155-258)||(10768988-10769091)
[»] chr4 (2 HSPs)
chr4 (409-452)||(26732288-26732331)
chr4 (409-446)||(31559602-31559639)
[»] chr8 (2 HSPs)
chr8 (409-447)||(28756599-28756637)
chr8 (392-445)||(6237803-6237856)
[»] chr5 (1 HSPs)
chr5 (409-451)||(7287155-7287197)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 60 - 388
Target Start/End: Complemental strand, 44187978 - 44187643
Alignment:
Q  60 ttctgattacactatacatataagttattcatttaaggtttatcataagcaaacatgaaatagttttatatggataataacctatagcttaatttctcta 159  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44187978 ttctgattacactgtacttataatttattcatttaaggtttatcataagcaaacatgaaatagttt-atatggataataacctatagcttaatttctcta 44187880  T
Q  160 acagcaaatatagaggaactcttcaaaacctacagatgccacaattatggatccaaacaatccccattggggatggaattggcttgacagatggatggct 259  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  44187879 acagcaaacatggaggaactcttcaaaacctacagatgccacaattatggatccaaacaatccccattggagatggaattggcttgatagatggatggct 44187780  T
Q  260 tcaaggcaatgggaaagacaaaacactaaagatcaaaagaatcatagatcagcaaaaggtgttgcaagccatatcat--------gagaaatctccaaat 351  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||        |||||||||||||||    
T  44187779 tcaaggccatgggaaggacaaaacactaaggatcaaaagaatcatagatcagcaaaaggtgctgcaagccataccatgtcagttggagaaatctccaaat 44187680  T
Q  352 tatatgatctaagagatcaaagtcaagatgataaaaa 388  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  44187679 tatatgctctaagagatcaaagccaagatgataaaaa 44187643  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 447
Target Start/End: Original strand, 45205341 - 45205378
Alignment:
Q  410 attatatttttatcttctctctctattgttttggtttc 447  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  45205341 attatatttttaatttctctctctattgttttggtttc 45205378  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 452
Target Start/End: Original strand, 51698924 - 51698965
Alignment:
Q  411 ttatatttttatcttctctctctattgttttggtttctgtgc 452  Q
    |||||||||||| |||||||||||||| |||||||| |||||    
T  51698924 ttatatttttattttctctctctattgatttggtttttgtgc 51698965  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 44188031 - 44187991
Alignment:
Q  18 catattctacgatttctaactaagcagttatgtaattgact 58  Q
    |||||| |||||||| |||||||||||| ||||||||||||    
T  44188031 catattttacgatttttaactaagcagtcatgtaattgact 44187991  T

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Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 73 - 388
Target Start/End: Original strand, 43095837 - 43096160
Alignment:
Q  73 atacatataagttattcatttaaggtttatcataagcaaacatgaaatagttttatatggataataacctatagcttaatttctctaacagcaaatatag 172  Q
    |||||||||| |||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| || |    
T  43095837 atacatataatttattcctttaagatttatgataagcaaacatgaaatagttttatatggataataacatataacttaatttctctaacagcaaacatgg 43095936  T
Q  173 aggaactcttcaaaacctacagatgccacaattatggatccaaacaatccccattggggatggaattggcttgacagatggatggcttcaaggcaatggg 272  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43095937 aggaactcttcaaaagctacagatgccacaattatggatccaaacaatccccattggggatggaattggcttgacagatggatggcttcaaggccatggg 43096036  T
Q  273 aaagacaaaacactaaagatcaaaagaatcatagatcagcaaaaggtgttgcaagccatatcat--------gagaaatctccaaattatatgatctaag 364  Q
    || ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||        ||||||||||||||||||||| ||||||    
T  43096037 aaggacaaaacactaaagatcagaagaatcatagatcaggaaaaggtgttgcaagccataccatgtcagttggagaaatctccaaattatatgctctaag 43096136  T
Q  365 agatcaaagtcaagatgataaaaa 388  Q
    |||||||| ||||||||| |||||    
T  43096137 agatcaaaatcaagatgacaaaaa 43096160  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 452
Target Start/End: Complemental strand, 41677332 - 41677289
Alignment:
Q  409 cattatatttttatcttctctctctattgttttggtttctgtgc 452  Q
    |||||||||||||| || |||||||||||||||||||| |||||    
T  41677332 cattatatttttattttatctctctattgttttggtttttgtgc 41677289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 446
Target Start/End: Complemental strand, 15470064 - 15470027
Alignment:
Q  409 cattatatttttatcttctctctctattgttttggttt 446  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  15470064 cattatctttttattttctctctctattgttttggttt 15470027  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 424 - 452
Target Start/End: Original strand, 48470717 - 48470745
Alignment:
Q  424 ttctctctctattgttttggtttctgtgc 452  Q
    |||||||||||||||||||||||||||||    
T  48470717 ttctctctctattgttttggtttctgtgc 48470745  T

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Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 32727158 - 32726786
Alignment:
Q  18 catattctacgatttctaactaagcagttatgtaattgactatt----------ctgattacactatacatataagttattcatttaaggtttatcataa 107  Q
    |||||| |||||||| |||||||||||| |||||||||||| ||          ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  32727158 catattttacgatttttaactaagcagtcatgtaattgactgttattggcagttctgattacactatacttataatttattcatttaaggtttatcataa 32727059  T
Q  108 gcaaacatgaaatagttttatatggataataacctatagcttaatttctctaacagcaaatatagaggaactcttcaaaacctacagatgccacaattat 207  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||| ||| ||||    
T  32727058 gcaaacatgaaatagttt-atatggataataacctatagcttaatttctctaacagcaaacatggaggaacccttcaaaacctacagatgctacagttat 32726960  T
Q  208 ggatccaaacaatccccattggggatggaattggcttgacagatggatggcttcaaggcaatgggaaagacaaaacactaaagatcaaaagaatcataga 307  Q
    |||||||||||||||||||||| ||||||||||                |||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  32726959 ggatccaaacaatccccattggagatggaattg----------------gcttcaaggccatgggaaggacaaaacactaaggatcaaaagaatcataga 32726876  T
Q  308 tcagcaaaaggtgttgcaagccatatcat--------gagaaatctccaaattatatgatctaagagatc-aaagtcaagatgataaaaa 388  Q
    ||||||||||||| ||||||||||| |||        ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||    
T  32726875 tcagcaaaaggtgctgcaagccataccatgtcagttggagaaatctccaaattatatgctctaagagatcaaaagtaaagatgataaaaa 32726786  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 451
Target Start/End: Original strand, 49069300 - 49069355
Alignment:
Q  396 tctctcagatatccattatatttttatcttctctctctattgttttggtttctgtg 451  Q
    ||||||| || | |||||| ||||||| ||||||||||||||||||||||| ||||    
T  49069300 tctctcatatttacattatgtttttattttctctctctattgttttggtttttgtg 49069355  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 451
Target Start/End: Original strand, 46095015 - 46095056
Alignment:
Q  410 attatatttttatcttctctctctattgttttggtttctgtg 451  Q
    ||||||||||||| ||||||||||||||| ||||||| ||||    
T  46095015 attatatttttattttctctctctattgtattggtttttgtg 46095056  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 441
Target Start/End: Original strand, 3683595 - 3683627
Alignment:
Q  409 cattatatttttatcttctctctctattgtttt 441  Q
    |||||||||||||| ||||||||||||||||||    
T  3683595 cattatatttttattttctctctctattgtttt 3683627  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 10769091 - 10768988
Alignment:
Q  155 ctctaacagcaaatatagaggaactcttcaaaacctacagatgccacaattatggatccaaacaatccccattggggatggaattggcttgacagatgga 254  Q
    ||||||||||||| || || ||| ||||||||| ||| | |    ||| ||||||||||||||||||| || |||||||||| |||| | || |||||||    
T  10769091 ctctaacagcaaacatggaagaattcttcaaaatctataaaccaaacatttatggatccaaacaatcctcactggggatggagttggttagagagatgga 10768992  T
Q  255 tggc 258  Q
    ||||    
T  10768991 tggc 10768988  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 452
Target Start/End: Original strand, 26732288 - 26732331
Alignment:
Q  409 cattatatttttatcttctctctctattgttttggtttctgtgc 452  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||    
T  26732288 cattatctttttattttctctctctattgttttggtttttgtgc 26732331  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 446
Target Start/End: Original strand, 31559602 - 31559639
Alignment:
Q  409 cattatatttttatcttctctctctattgttttggttt 446  Q
    |||||||||||||  |||||||||||||||||||||||    
T  31559602 cattatatttttactttctctctctattgttttggttt 31559639  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 28756599 - 28756637
Alignment:
Q  409 cattatatttttatcttctctctctattgttttggtttc 447  Q
    |||||||||||||| || |||||||||||||||||||||    
T  28756599 cattatatttttattttttctctctattgttttggtttc 28756637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 445
Target Start/End: Complemental strand, 6237856 - 6237803
Alignment:
Q  392 attttctctcagatatccattatatttttatcttctctctctattgttttggtt 445  Q
    ||||||| ||| || | |||||||||||||| |||||||||||||| |||||||    
T  6237856 attttctttcatatttacattatatttttattttctctctctattgctttggtt 6237803  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 451
Target Start/End: Complemental strand, 7287197 - 7287155
Alignment:
Q  409 cattatatttttatcttctctctctattgttttggtttctgtg 451  Q
    |||||||||||||  ||||||||||||||||||||||| ||||    
T  7287197 cattatatttttactttctctctctattgttttggtttttgtg 7287155  T

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