View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3190_high_19 (Length: 410)

Name: NF3190_high_19
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3190_high_19
NF3190_high_19
[»] chr8 (14 HSPs)
chr8 (27-391)||(15995332-15995693)
chr8 (150-391)||(15608255-15608494)
chr8 (150-391)||(15652067-15652306)
chr8 (150-306)||(15616852-15617008)
chr8 (150-306)||(15640044-15640200)
chr8 (150-304)||(15650191-15650345)
chr8 (150-304)||(15626434-15626588)
chr8 (16-183)||(15971816-15971984)
chr8 (40-159)||(12068162-12068282)
chr8 (235-391)||(12068316-12068472)
chr8 (233-306)||(15628375-15628448)
chr8 (202-312)||(15971980-15972089)
chr8 (36-100)||(12063463-12063526)
chr8 (150-185)||(15628455-15628490)
[»] chr2 (1 HSPs)
chr2 (257-348)||(2660227-2660318)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 27 - 391
Target Start/End: Original strand, 15995332 - 15995693
Alignment:
Q  27 caaaacaaaaaccatgtaaatgataattttatagttgatcaatatcaataaagatcaacaccttgaattttagtactagatttcgatgatttaccctaaa 126  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15995332 caaaacaacaaccatataaatgataattttatagttgatcaatatcaataaagatcaacaccttgaattttagtactagatttcgatgatttaccttaaa 15995431  T
Q  127 tataaacaaaaaatctaaagaagattttttagtaccgtttttatggaaccaacaaacgacattgacggcgacattcaaactccaagattaggtttagann 226  Q
     ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||      
T  15995432 cataaacaaaaaatctaaagaagattttttggtaccgtttttacggaaccaacaaactacattgacggcgacattcaaactcctagattaggtttagatt 15995531  T
Q  227 nnnnnnagccaaaaagacagtaatggcggatgaacagcttcttaaacacttcaaatgtctgatttcacttgaaatcatgtccgatcccattatcccctca 326  Q
          |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15995532 ttttttagccaaaaagacagcaatggcggctgaacagcttcttgaacacttcaaatgtctgatttcacttgaaatcatgtccgatcccattatcctctca 15995631  T
Q  327 tccgatcagacctttgaccgttgttccgttttttcttagcatacaccacatagtgtatgatgatg 391  Q
    || ||||||||||||||||    |||||||| |||||||||| || |||||||||||||||||||    
T  15995632 tctgatcagacctttgacc---attccgtttattcttagcatgcatcacatagtgtatgatgatg 15995693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 150 - 391
Target Start/End: Complemental strand, 15608494 - 15608255
Alignment:
Q  150 attttttagtaccgtttttatggaaccaacaaacgacattgacggcgacattcaaactccaagattaggtttagannnnnnnnagccaaaaagacagtaa 249  Q
    |||||||||||||||||||||||||||||||||||| || || || | ||||||||||| |||||||||||||||        |||||||||||||| ||    
T  15608494 attttttagtaccgtttttatggaaccaacaaacgagatcgatggtggcattcaaactcaaagattaggtttagatttcttttagccaaaaagacagcaa 15608395  T
Q  250 tggcggatgaacagcttcttaaacacttcaaatgtctgatttcacttgaaatcatgtccgatcccattatcccctcatccgatcagacctttgaccgttg 349  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||  ||| || |||||| ||| |    ||||||||| | |||||     
T  15608394 tggcggctgaacagcttcttgaacacttcaaatgtctgatttcacttgaaatcatgtatgattccgttatcctctcctgtagtcagaccttaggccgttt 15608295  T
Q  350 ttccgttttttcttagcatacaccacatagtgtatgatgatg 391  Q
    |  || ||||||| ||||||| ||||  ||||||||||||||    
T  15608294 tctcggtttttctcagcatactccac--agtgtatgatgatg 15608255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 150 - 391
Target Start/End: Complemental strand, 15652306 - 15652067
Alignment:
Q  150 attttttagtaccgtttttatggaaccaacaaacgacattgacggcgacattcaaactccaagattaggtttagannnnnnnnagccaaaaagacagtaa 249  Q
    |||||||||||||||||||||||||||||||||||| || ||||| | ||||||||||| |||||||||||||||         |||||||||| || ||    
T  15652306 attttttagtaccgtttttatggaaccaacaaacgagatcgacggtggcattcaaactcaaagattaggtttagatttcttttggccaaaaagaaagcaa 15652207  T
Q  250 tggcggatgaacagcttcttaaacacttcaaatgtctgatttcacttgaaatcatgtccgatcccattatcccctcatccgatcagacctttgaccgttg 349  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||  ||| || |||||| ||| ||   ||||||||| | |||||     
T  15652206 tggcggctgaacagcttcttgaacacttcaaatgtctgatttcacttgaaatcatgtatgattccgttatcctctcctctagtcagaccttaggccgttt 15652107  T
Q  350 ttccgttttttcttagcatacaccacatagtgtatgatgatg 391  Q
    |  || ||||||| ||||||| ||||  ||||||||||||||    
T  15652106 tctcggtttttctcagcatactccac--agtgtatgatgatg 15652067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 150 - 306
Target Start/End: Complemental strand, 15617008 - 15616852
Alignment:
Q  150 attttttagtaccgtttttatggaaccaacaaacgacattgacggcgacattcaaactccaagattaggtttagannnnnnnnagccaaaaagacagtaa 249  Q
    |||||||||||||||||||||||||||||||||||| || || || | ||||||||||| |||||||||||||||        |||||||||||||| ||    
T  15617008 attttttagtaccgtttttatggaaccaacaaacgagatcgatggtgtcattcaaactcaaagattaggtttagatatcttttagccaaaaagacagcaa 15616909  T
Q  250 tggcggatgaacagcttcttaaacacttcaaatgtctgatttcacttgaaatcatgt 306  Q
    |||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  15616908 tggcggctgaacagcttcttgaacacttcaaatgtctgatgtcacttgaaatcatgt 15616852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 150 - 306
Target Start/End: Complemental strand, 15640200 - 15640044
Alignment:
Q  150 attttttagtaccgtttttatggaaccaacaaacgacattgacggcgacattcaaactccaagattaggtttagannnnnnnnagccaaaaagacagtaa 249  Q
    |||||||||||||||||||||||||||||||||||| || || || | ||||||||||| |||||||||||||||        |||||||||||||| ||    
T  15640200 attttttagtaccgtttttatggaaccaacaaacgagatcgatggtgccattcaaactcaaagattaggtttagatatcttttagccaaaaagacagcaa 15640101  T
Q  250 tggcggatgaacagcttcttaaacacttcaaatgtctgatttcacttgaaatcatgt 306  Q
    |||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  15640100 tggcggctgaacagcttcttgaacacttcaaatgtctgatgtcacttgaaatcatgt 15640044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 150 - 304
Target Start/End: Complemental strand, 15650345 - 15650191
Alignment:
Q  150 attttttagtaccgtttttatggaaccaacaaacgacattgacggcgacattcaaactccaagattaggtttagannnnnnnnagccaaaaagacagtaa 249  Q
    |||||||||||||||||||||||||||||||||||| || || || | ||||||||||| |||||||||||||||        |||||||||||||| ||    
T  15650345 attttttagtaccgtttttatggaaccaacaaacgagatcgatggtggcattcaaactcaaagattaggtttagatttcttttagccaaaaagacagcaa 15650246  T
Q  250 tggcggatgaacagcttcttaaacacttcaaatgtctgatttcacttgaaatcat 304  Q
    |||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  15650245 tggcggctgaacagcttcttgaacacttcaaatgtctgatatcacttgaaatcat 15650191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 150 - 304
Target Start/End: Complemental strand, 15626588 - 15626434
Alignment:
Q  150 attttttagtaccgtttttatggaaccaacaaacgacattgacggcgacattcaaactccaagattaggtttagannnnnnnnagccaaaaagacagtaa 249  Q
    ||||||||||||| |||||||||||||||||||||| || || || | ||||||||||| |||||||||||||||        |||||||||||||| ||    
T  15626588 attttttagtaccatttttatggaaccaacaaacgagatcgatggtggcattcaaactcaaagattaggtttagatttcttttagccaaaaagacagcaa 15626489  T
Q  250 tggcggatgaacagcttcttaaacacttcaaatgtctgatttcacttgaaatcat 304  Q
    |||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  15626488 tggcggctgaacagcttcttgaacacttcaaatgtctgatgtcacttgaaatcat 15626434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 15971816 - 15971984
Alignment:
Q  16 atgaattaaaacaaaacaaaaaccatgtaaatgataattttatagttgatcaatatcaataaagatcaacaccttgaattttagtactagatttcgatga 115  Q
    ||||||||||   ||||| ||||| |||||||||| |||||||   ||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||    
T  15971816 atgaattaaactgaaacagaaaccttgtaaatgatcattttatgcatgatcaatatcaataaagatcaacaccttgaatgttagtactaaatttcaatga 15971915  T
Q  116 ttt-accctaaatataaacaaaaaatctaaagaagattttttagtaccgtttttatggaaccaacaaac 183  Q
    ||| ||| | || ||||||||||||||||||||| ||||||| | || |||||||||| || |||||||    
T  15971916 tttaacctttaacataaacaaaaaatctaaagaaaattttttcgcactgtttttatgggactaacaaac 15971984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 12068162 - 12068282
Alignment:
Q  40 atgtaaatgataattttatagttgatcaatatcaataaagatcaacaccttgaattttagtactagatttcgatgattt-accctaaatataaacaaaaa 138  Q
    ||||||||||| | |||||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| || ||||  ||||||| |||    
T  12068162 atgtaaatgatgactttataattgatcaatatcaataaagatctacaccttgaatgttagttctagatttcgatgatttaacactaagcataaacagaaa 12068261  T
Q  139 atctaaagaagattttttagt 159  Q
     ||||||||||||||||||||    
T  12068262 ttctaaagaagattttttagt 12068282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 235 - 391
Target Start/End: Original strand, 12068316 - 12068472
Alignment:
Q  235 ccaaaaagacagtaatggcggatgaacagcttcttaaacacttcaaatgtctgatttcacttgaaatcatgtccgatcccattatcccctcatccgatca 334  Q
    |||||||||||| |||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||| |||||| |||||| ||  || | |||    
T  12068316 ccaaaaagacagcaatggcggttgaacagcttcttgaacacttcaaatgtccgattgcacttgaaatcatgtctgatcccgttatcctcttctctggtca 12068415  T
Q  335 gacctttgaccgttgttccgttttttcttagcatacaccacatagtgtatgatgatg 391  Q
      |||| ||||||| | ||| |||||| |||| ||| ||||||||| ||||||||||    
T  12068416 acccttagaccgttatcccggtttttcgtagcgtactccacatagtctatgatgatg 12068472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 15628448 - 15628375
Alignment:
Q  233 agccaaaaagacagtaatggcggatgaacagcttcttaaacacttcaaatgtctgatttcacttgaaatcatgt 306  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  15628448 agccaaaaagacagcaatggcggctgaacagcttcttgaacacttcaaatgtctgatttcacttgtaatcatgt 15628375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 202 - 312
Target Start/End: Original strand, 15971980 - 15972089
Alignment:
Q  202 caaactccaagattaggtttagannnnnnnnagccaaaaagacagtaatggcggatgaacagcttcttaaacacttcaaatgtctgatttcacttgaaat 301  Q
    |||||||||||||||||||||||        |||||||||||||| |||| ||| |||| |||||||| |||||||||||||||  ||||||||||||||    
T  15971980 caaactccaagattaggtttagacttttgt-agccaaaaagacagaaatgacggctgaatagcttcttgaacacttcaaatgtccaatttcacttgaaat 15972078  T
Q  302 catgtccgatc 312  Q
    |||||||||||    
T  15972079 catgtccgatc 15972089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 12063463 - 12063526
Alignment:
Q  36 aaccatgtaaatgataattttatagttgatcaatatcaataaagatcaacaccttgaattttagt 100  Q
    ||||||||  |||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||    
T  12063463 aaccatgtgcatgataattttatagttgctcaatatcaataaagat-aacaccttaaatgttagt 12063526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 15628490 - 15628455
Alignment:
Q  150 attttttagtaccgtttttatggaaccaacaaacga 185  Q
    ||||||||||||||||||||||||||||||||||||    
T  15628490 attttttagtaccgtttttatggaaccaacaaacga 15628455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 348
Target Start/End: Complemental strand, 2660318 - 2660227
Alignment:
Q  257 tgaacagcttcttaaacacttcaaatgtctgatttcacttgaaatcatgtccgatcccattatcccctcatccgatcagacctttgaccgtt 348  Q
    |||||||||| || ||||||| || || |  ||||| |||||||| |||||||||||  |||||| ||| |||| |||||||||||||||||    
T  2660318 tgaacagcttattgaacacttgaagtgcccaatttcgcttgaaattatgtccgatccggttatcctctcctccggtcagacctttgaccgtt 2660227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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