View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3190_high_2 (Length: 852)

Name: NF3190_high_2
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3190_high_2
NF3190_high_2
[»] chr7 (8 HSPs)
chr7 (140-257)||(15578055-15578172)
chr7 (140-257)||(38916089-38916206)
chr7 (140-256)||(28750624-28750740)
chr7 (140-257)||(27230770-27230887)
chr7 (196-257)||(32741518-32741579)
chr7 (203-245)||(34567692-34567734)
chr7 (203-257)||(41342294-41342348)
chr7 (189-222)||(21972073-21972106)
[»] chr2 (9 HSPs)
chr2 (140-257)||(9914509-9914626)
chr2 (140-256)||(9074901-9075017)
chr2 (140-257)||(30674135-30674252)
chr2 (189-248)||(8373215-8373274)
chr2 (192-248)||(25571696-25571752)
chr2 (204-248)||(32479876-32479920)
chr2 (189-248)||(19037231-19037290)
chr2 (204-257)||(19037639-19037692)
chr2 (293-334)||(39864736-39864777)
[»] chr6 (8 HSPs)
chr6 (140-254)||(12307018-12307132)
chr6 (140-257)||(605277-605394)
chr6 (142-257)||(8701197-8701312)
chr6 (156-257)||(7727082-7727183)
chr6 (140-192)||(5365388-5365440)
chr6 (189-248)||(4296660-4296719)
chr6 (140-192)||(2481241-2481293)
chr6 (189-248)||(28113978-28114037)
[»] chr1 (6 HSPs)
chr1 (140-254)||(40889077-40889191)
chr1 (203-248)||(3565115-3565160)
chr1 (503-570)||(38742444-38742512)
chr1 (140-192)||(44681144-44681196)
chr1 (205-248)||(3564628-3564671)
chr1 (203-248)||(29441590-29441635)
[»] chr5 (6 HSPs)
chr5 (140-257)||(25672562-25672679)
chr5 (140-257)||(14394276-14394393)
chr5 (140-256)||(20983774-20983890)
chr5 (520-580)||(3596940-3597001)
chr5 (502-580)||(502844-502921)
chr5 (519-580)||(16570523-16570585)
[»] chr3 (5 HSPs)
chr3 (140-257)||(30384752-30384869)
chr3 (140-256)||(53153542-53153658)
chr3 (140-254)||(785469-785583)
chr3 (189-248)||(18715208-18715267)
chr3 (189-222)||(39737279-39737312)
[»] chr4 (5 HSPs)
chr4 (140-256)||(23643713-23643829)
chr4 (140-256)||(43013062-43013178)
chr4 (156-257)||(54714560-54714661)
chr4 (140-192)||(12632824-12632876)
chr4 (140-192)||(27108531-27108583)
[»] chr8 (5 HSPs)
chr8 (140-257)||(186979-187095)
chr8 (140-257)||(308606-308723)
chr8 (140-256)||(25276840-25276955)
chr8 (204-257)||(3967022-3967075)
chr8 (189-246)||(3988694-3988751)


Alignment Details
Target: chr7 (Bit Score: 118; Significance: 9e-60; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 15578055 - 15578172
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15578055 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 15578154  T
Q  240 ttaggtaaaccaattgag 257  Q
    ||||||||||||||||||    
T  15578155 ttaggtaaaccaattgag 15578172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 140 - 257
Target Start/End: Complemental strand, 38916206 - 38916089
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38916206 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 38916107  T
Q  240 ttaggtaaaccaattgag 257  Q
    |||| |||||||||||||    
T  38916106 ttagataaaccaattgag 38916089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 140 - 256
Target Start/End: Complemental strand, 28750740 - 28750624
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28750740 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 28750641  T
Q  240 ttaggtaaaccaattga 256  Q
    |||| ||||||||||||    
T  28750640 ttagataaaccaattga 28750624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 27230770 - 27230887
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27230770 agatgataaataacataattgttgatgttagtgctacaaaaacaaacaataaatacaattatatcttattttaattagttgacttatatctcactttaat 27230869  T
Q  240 ttaggtaaaccaattgag 257  Q
    |||||||||  |||||||    
T  27230870 ttaggtaaaataattgag 27230887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 32741579 - 32741518
Alignment:
Q  196 aactatatcttattttaattagttgacttatatctcactttaatttaggtaaaccaattgag 257  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||    
T  32741579 aactatatcttaatttaattagttgacttatatctcactataatttagataaatcaattgag 32741518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 34567692 - 34567734
Alignment:
Q  203 tcttattttaattagttgacttatatctcactttaatttaggt 245  Q
    |||||||||||||||||||||||| | ||||||||||| ||||    
T  34567692 tcttattttaattagttgacttatttatcactttaattaaggt 34567734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 41342348 - 41342294
Alignment:
Q  203 tcttattttaattagttgacttatatctcactttaatttaggtaaaccaattgag 257  Q
    ||||||||||||||||||| |||| ||||||||||||  ||||||| ||| ||||    
T  41342348 tcttattttaattagttgatttatttctcactttaatagaggtaaaacaaatgag 41342294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 21972073 - 21972106
Alignment:
Q  189 taaatacaactatatcttattttaattagttgac 222  Q
    ||||||||||||| ||||||||||||||||||||    
T  21972073 taaatacaactatttcttattttaattagttgac 21972106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 9e-60; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 9914509 - 9914626
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9914509 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 9914608  T
Q  240 ttaggtaaaccaattgag 257  Q
    ||||||||||||||||||    
T  9914609 ttaggtaaaccaattgag 9914626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 9074901 - 9075017
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  9074901 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatctcattttaattagttgatttatatctcactttaat 9075000  T
Q  240 ttaggtaaaccaattga 256  Q
    |||||||||||||||||    
T  9075001 ttaggtaaaccaattga 9075017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 140 - 257
Target Start/End: Complemental strand, 30674252 - 30674135
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30674252 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagatgacttatatctcactttaat 30674153  T
Q  240 ttaggtaaaccaattgag 257  Q
    ||| ||||| ||||||||    
T  30674152 ttatgtaaaacaattgag 30674135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 8373215 - 8373274
Alignment:
Q  189 taaatacaactatatcttattttaattagttgacttatatctcactttaatttaggtaaa 248  Q
    ||||||||||| ||| |||||||||||| ||||||||| | ||||||||||| |||||||    
T  8373215 taaatacaactttattttattttaattaattgacttatttatcactttaattaaggtaaa 8373274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 25571696 - 25571752
Alignment:
Q  192 atacaactatatcttattttaattagttgacttatatctcactttaatttaggtaaa 248  Q
    |||||||| ||| |||||||||||| ||||||||| | ||||||||||| |||||||    
T  25571696 atacaactctattttattttaattaattgacttatttatcactttaattaaggtaaa 25571752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 32479876 - 32479920
Alignment:
Q  204 cttattttaattagttgacttatatctcactttaatttaggtaaa 248  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||    
T  32479876 cttattttaattagttgatttatttctcactttaatataggtaaa 32479920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 19037290 - 19037231
Alignment:
Q  189 taaatacaactatatcttattttaattagttgacttatatctcactttaatttaggtaaa 248  Q
    ||||||||||| | | |||||||||||| ||||||||| | ||||||||||| |||||||    
T  19037290 taaatacaactctcttttattttaattaattgacttatttatcactttaattaaggtaaa 19037231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 19037639 - 19037692
Alignment:
Q  204 cttattttaattagttgacttatatctcactttaatttaggtaaaccaattgag 257  Q
    |||||||||||||||||| |||| ||||||||||||  ||||||| ||| ||||    
T  19037639 cttattttaattagttgatttatttctcactttaatagaggtaaaacaagtgag 19037692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 39864777 - 39864736
Alignment:
Q  293 ccagtgccctgggggcattggttagcagcacccaaaaaataa 334  Q
    ||||||||| ||||||| |||||||||||||||| |||||||    
T  39864777 ccagtgccccgggggcactggttagcagcacccataaaataa 39864736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 1e-55; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 12307132 - 12307018
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12307132 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 12307033  T
Q  240 ttaggtaaaccaatt 254  Q
    ||||||||| |||||    
T  12307032 ttaggtaaatcaatt 12307018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 605277 - 605394
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  605277 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgatttatatctcaatttaat 605376  T
Q  240 ttaggtaaaccaattgag 257  Q
    ||||||||||||||||||    
T  605377 ttaggtaaaccaattgag 605394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 142 - 257
Target Start/End: Original strand, 8701197 - 8701312
Alignment:
Q  142 atgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaattt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8701197 atgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatatcactttaattt 8701296  T
Q  242 aggtaaaccaattgag 257  Q
    | ||||| ||||||||    
T  8701297 aagtaaatcaattgag 8701312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 7727183 - 7727082
Alignment:
Q  156 aattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaatttaggtaaaccaattg 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||    
T  7727183 aattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgatttatatcgcactttaatttaggtaaatcaattg 7727084  T
Q  256 ag 257  Q
    ||    
T  7727083 ag 7727082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 5365440 - 5365388
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaa 192  Q
    ||||||||||||||||||| ||| || ||||||||||||| ||||||||||||    
T  5365440 agatgataaataacataatggataatattagtgctacaaagacaaacaataaa 5365388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 4296719 - 4296660
Alignment:
Q  189 taaatacaactatatcttattttaattagttgacttatatctcactttaatttaggtaaa 248  Q
    ||||||||||| | | |||||||||||||||||||||| | ||||||||||| |||||||    
T  4296719 taaatacaactctcttttattttaattagttgacttatttatcactttaattaaggtaaa 4296660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 2481241 - 2481293
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaa 192  Q
    ||||||||||||||||||| |||  | ||||||||||||| ||||||||||||    
T  2481241 agatgataaataacataatggatagtattagtgctacaaagacaaacaataaa 2481293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 28113978 - 28114037
Alignment:
Q  189 taaatacaactatatcttattttaattagttgacttatatctcactttaatttaggtaaa 248  Q
    ||||||||||| | | |||||||||||| ||||||||| | ||||||||||| |||||||    
T  28113978 taaatacaactctcttttattttaattaattgacttatttatcactttaattaaggtaaa 28114037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 1e-55; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 140 - 254
Target Start/End: Original strand, 40889077 - 40889191
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40889077 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 40889176  T
Q  240 ttaggtaaaccaatt 254  Q
    ||||||||| |||||    
T  40889177 ttaggtaaaacaatt 40889191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 3565115 - 3565160
Alignment:
Q  203 tcttattttaattagttgacttatatctcactttaatttaggtaaa 248  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||    
T  3565115 tcttattttaattagttgacttatttctcactttaattgaggtaaa 3565160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 503 - 570
Target Start/End: Complemental strand, 38742512 - 38742444
Alignment:
Q  503 aaaagatctattcatcatcaaatttttctaaaaatatattttaaataga-ataatcaaaatgagttaaa 570  Q
    |||||||  |||||| |||||| || |||||||||||||||| |||||| ||||||||| |||||||||    
T  38742512 aaaagattaattcataatcaaagttctctaaaaatatattttcaatagatataatcaaagtgagttaaa 38742444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 44681196 - 44681144
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaa 192  Q
    ||||||||||||||||||| |||  | ||||||||||||| ||||||||||||    
T  44681196 agatgataaataacataatggatagtattagtgctacaaagacaaacaataaa 44681144  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 3564671 - 3564628
Alignment:
Q  205 ttattttaattagttgacttatatctcactttaatttaggtaaa 248  Q
    |||||||| ||||||||||||| ||||||||||||| |||||||    
T  3564671 ttattttagttagttgacttatttctcactttaattgaggtaaa 3564628  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 29441590 - 29441635
Alignment:
Q  203 tcttattttaattagttgacttatatctcactttaatttaggtaaa 248  Q
    |||||||||||||||||||||||| | ||| ||||||| |||||||    
T  29441590 tcttattttaattagttgacttatttatcattttaattaaggtaaa 29441635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 6e-55; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 25672562 - 25672679
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25672562 agatgataaataacataattgatgatgtttgtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatatcactttaat 25672661  T
Q  240 ttaggtaaaccaattgag 257  Q
    ||||||||||||||||||    
T  25672662 ttaggtaaaccaattgag 25672679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 14394276 - 14394393
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14394276 agatgataaataacataattgatgatgttagtgttacaaaaacaaataataaatacaattatatcttattttaattagttgacttatatctcactttaat 14394375  T
Q  240 ttaggtaaaccaattgag 257  Q
    ||||||||||||||||||    
T  14394376 ttaggtaaaccaattgag 14394393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 20983774 - 20983890
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20983774 agatgataaataacataattgatgatgttaatactacaaaaacaaacaataaatacaactatatctcattttaattagttgacttatatctcactttaat 20983873  T
Q  240 ttaggtaaaccaattga 256  Q
    |||||||||||||||||    
T  20983874 ttaggtaaaccaattga 20983890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 580
Target Start/End: Original strand, 3596940 - 3597001
Alignment:
Q  520 tcaaatttttctaaaaatatattttaaatagaa-taatcaaaatgagttaaacagaaatata 580  Q
    |||||||||| |||||||||||||| ||||||| ||||||||| || ||||| |||||||||    
T  3596940 tcaaatttttataaaaatatatttttaatagaattaatcaaaacgaattaaaaagaaatata 3597001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 502 - 580
Target Start/End: Complemental strand, 502921 - 502844
Alignment:
Q  502 caaaagatctattcatcatcaaatttttctaaaaatatattttaaatagaa-taatcaaaatgagttaaacagaaatata 580  Q
    ||||||||  |||||| |||||| || |||||||||||||||| ||||||| ||||||||  |||||||| |||||||||    
T  502921 caaaagattcattcataatcaaagttctctaaaaatatattttcaatagaattaatcaaa--gagttaaaaagaaatata 502844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 519 - 580
Target Start/End: Original strand, 16570523 - 16570585
Alignment:
Q  519 atcaaatttttctaaaaatatattttaaatagaa-taatcaaaatgagttaaacagaaatata 580  Q
    |||||| || |||||||||||||||| ||||||| |||||||| ||| ||||| |||||||||    
T  16570523 atcaaagttctctaaaaatatatttttaatagaattaatcaaagtgaattaaaaagaaatata 16570585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 6e-55; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 140 - 257
Target Start/End: Complemental strand, 30384869 - 30384752
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30384869 agatgataaataacataattaatgatgttagtgctacaaaaacaaacaataaatacaattatatcttattttaattagttgacttatatctcactttaat 30384770  T
Q  240 ttaggtaaaccaattgag 257  Q
    ||||||||||||||||||    
T  30384769 ttaggtaaaccaattgag 30384752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 140 - 256
Target Start/End: Complemental strand, 53153658 - 53153542
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53153658 agatgataaataacatcattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 53153559  T
Q  240 ttaggtaaaccaattga 256  Q
    |||| ||||||||||||    
T  53153558 ttagataaaccaattga 53153542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 785583 - 785469
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| ||||||    
T  785583 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagtggatttacatctcaatttaat 785484  T
Q  240 ttaggtaaaccaatt 254  Q
    || | ||||||||||    
T  785483 tttgttaaaccaatt 785469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 18715267 - 18715208
Alignment:
Q  189 taaatacaactatatcttattttaattagttgacttatatctcactttaatttaggtaaa 248  Q
    ||||||||||||| | |||||||||||| ||||||||| | ||||||||||| |||||||    
T  18715267 taaatacaactatcttttattttaattaattgacttatttatcactttaattaaggtaaa 18715208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 39737312 - 39737279
Alignment:
Q  189 taaatacaactatatcttattttaattagttgac 222  Q
    ||||||||||||| ||||||||||||||||||||    
T  39737312 taaatacaactatttcttattttaattagttgac 39737279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 2e-54; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 23643713 - 23643829
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23643713 agatgataaataacataattgatgatgttagtgctacgaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 23643812  T
Q  240 ttaggtaaaccaattga 256  Q
    ||||||||| |||||||    
T  23643813 ttaggtaaatcaattga 23643829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 43013062 - 43013178
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43013062 agatgataaataacataattgatgatgttaatgctacaaaaacaaacaataaatacaactatatctcattttaattagttgacttatatctcactttaat 43013161  T
Q  240 ttaggtaaaccaattga 256  Q
    |||||||||||||||||    
T  43013162 ttaggtaaaccaattga 43013178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 54714661 - 54714560
Alignment:
Q  156 aattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaatttaggtaaaccaattg 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54714661 aattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaatttaggtaaaccaattg 54714562  T
Q  256 ag 257  Q
    ||    
T  54714561 ag 54714560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 12632876 - 12632824
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaa 192  Q
    ||||||||||||||||||| ||| || ||||||||||||| ||||||||||||    
T  12632876 agatgataaataacataatggataatattagtgctacaaagacaaacaataaa 12632824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 27108583 - 27108531
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaa 192  Q
    ||||||||||||||||||| |||  | ||||||||||||| ||||||||||||    
T  27108583 agatgataaataacataatggatagtattagtgctacaaagacaaacaataaa 27108531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 8e-48; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 186979 - 187095
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||    
T  186979 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaattatatctta-tataattagttgacttatatctcactttaat 187077  T
Q  240 ttaggtaaaccaattgag 257  Q
    |||||||||| |||||||    
T  187078 ttaggtaaactaattgag 187095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 308606 - 308723
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||    
T  308606 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatataactatatcttattttaattagttgatttatatctcattttaat 308705  T
Q  240 ttaggtaaaccaattgag 257  Q
    |||  |||||||||||||    
T  308706 ttaaataaaccaattgag 308723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 140 - 256
Target Start/End: Complemental strand, 25276955 - 25276840
Alignment:
Q  140 agatgataaataacataattgatgatgttagtgctacaaaaacaaacaataaatacaactatatcttattttaattagttgacttatatctcactttaat 239  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  25276955 agatgataaataacataattgatgatgttagtgcta-aaaaacaaacaataaatacaactatattttattttaattacttgacttatatctcactttaat 25276857  T
Q  240 ttaggtaaaccaattga 256  Q
    |||| ||||||||||||    
T  25276856 ttagataaaccaattga 25276840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 3967075 - 3967022
Alignment:
Q  204 cttattttaattagttgacttatatctcactttaatttaggtaaaccaattgag 257  Q
    |||||||||||||||||| |||| ||||||||||||  ||||||| ||| ||||    
T  3967075 cttattttaattagttgatttatttctcactttaatagaggtaaaacaagtgag 3967022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 3988694 - 3988751
Alignment:
Q  189 taaatacaactatatcttattttaattagttgacttatatctcactttaatttaggta 246  Q
    ||||||||||| | | |||||||||||| ||||||||| | ||||||||||| |||||    
T  3988694 taaatacaactctcttttattttaattaattgacttatttatcactttaattaaggta 3988751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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