View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_high_21 (Length: 384)
Name: NF3190_high_21
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_high_21 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 7081422 - 7081056
Alignment:
| Q |
18 |
gagaaatccggcaactcttccggaaaacaaatgacagaacttactggtataaatgaaatcaacaaagaagcattcatttgtgattttgcatttgatcctt |
117 |
Q |
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| T |
7081422 |
gagaaatccggcaactcttccggaaatcaaatgacagaacttactggtataaatgaaatcaacaaagaagcattcatttgtgattttgcatttgatcctt |
7081323 |
T |
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| Q |
118 |
gtggctattcaatgaatggaatggatggagaatgctattctaccattcatgtgactccggaagatggttatagctatgcaagctttgaatgtgtggggtc |
217 |
Q |
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| T |
7081322 |
gtggctattcaatgaatggaatggatggagaatgctattctaccattcatgtgactccggaagatggttatagctatgcaagctttgaatgtgtggggtc |
7081223 |
T |
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| Q |
218 |
cataagcgacaatgatgacaacattgttcatatgttgaggaaggttgttcagattttccgaccagggacaatgtcggtgtcaataacgacatgtagtgag |
317 |
Q |
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| T |
7081222 |
cataagcgacaatgatgacaacattgttcatatgttgaggaaggttgttcagattttccgaccagggacaatgtcggtgtcgataacgacatgtagtgag |
7081123 |
T |
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| Q |
318 |
tataacaatgaggtttggagaaaggttactggtgcattggagcctcttgggttgaaatgtaggagtt |
384 |
Q |
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| T |
7081122 |
tataacaatgaggtttggagaaaggttactggtgcattggagcctcttgggttgaaatgtaggagtt |
7081056 |
T |
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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 217
Target Start/End: Original strand, 49020414 - 49020594
Alignment:
| Q |
37 |
ccggaaaacaaatgacagaacttactggtataaatgaaatcaacaaagaagcattcatttgtgattttgcatttgatccttgtggctattcaatgaatgg |
136 |
Q |
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| T |
49020414 |
ccggaaaagagatgacggagcttactggaatcaatgaaataaacccaaatgcattcatttgtgactttgcatttgatccttgtggatattcaatgaatgg |
49020513 |
T |
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| Q |
137 |
aatggatggagaatgctattctaccattcatgtgactccggaagatggttatagctatgcaagctttgaatgtgtggggtc |
217 |
Q |
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| T |
49020514 |
aatggatgatgattggtattccaccattcatgttacaccagaagatggtttcagctatgcaagctttgaatgtgttgggtc |
49020594 |
T |
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