View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_high_29 (Length: 350)
Name: NF3190_high_29
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 157 - 333
Target Start/End: Complemental strand, 10945064 - 10944888
Alignment:
| Q |
157 |
tgatgtaagagatgaatttccctcctctcttaagctattgaacattaatggatgccgctattaacagcaaggtatgccaatcggagaagtcgtcatgtgt |
256 |
Q |
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| T |
10945064 |
tgatggaagagatgaatttcccttctctcttaagctattgaacattaatggaagccgctattaacagcaagatatgccaatcggagaagtcgtcatgtgt |
10944965 |
T |
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| Q |
257 |
ccaagatcgctcacatccctgtcataaaaataaattatgaagtgataatatgagccatggcaaaggaaatgaagaat |
333 |
Q |
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| T |
10944964 |
ccaagatcgctcacatgcctgtcataaaaataaattatgaagtgataatatgagccatggcaaaggaaatgaagaat |
10944888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 163 - 333
Target Start/End: Complemental strand, 10955335 - 10955164
Alignment:
| Q |
163 |
aagagatgaatttccctcctctcttaagctattgaacattaatggatgcc-gctattaacagcaaggtatgccaatcggagaagtcgtcatgtgtccaag |
261 |
Q |
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| T |
10955335 |
aagagatgaatttccctcctctcttaagctattgaacattaacggatgcccgctattaacatcaatgtatgccaatctgagaagtcgtcatgtgtccaag |
10955236 |
T |
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| Q |
262 |
atcgctcacatccctgt-cataaaaataaattatgaagtgataatatgagccatggcaaaggaaatgaagaat |
333 |
Q |
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| T |
10955235 |
atcgctgacatccctgtccataaaaattaattatgaa-tgttaatatgagccatggcaaaggaaattaagaat |
10955164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 10945142 - 10945058
Alignment:
| Q |
18 |
tatttcctctctcactgcatttcctaaaacgtggagcaattgcacatcacttgtggatttgtactcagaaaattgctgtgatgga |
102 |
Q |
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| T |
10945142 |
tatttcctctctcactgcatttcctaaaacgtggagcaattgcacatcacttgtggatttgtacttagaaaattgctgtgatgga |
10945058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 10967388 - 10967288
Alignment:
| Q |
48 |
gtggagcaattgcacatcacttgtggatttgtactcagaaaattgctgtgatggacttacctcctttcaactgaatggttttcatgtgctccagagtctt |
147 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| | |||| |||||||| |
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| T |
10967388 |
gtggagcaattacacatcacttgtggatttgtacttagaaaattgttgtgatggacttacctcctttcaactgaatggttttcctacgctcgagagtctt |
10967289 |
T |
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| Q |
148 |
t |
148 |
Q |
| |
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| |
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| T |
10967288 |
t |
10967288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 13397855 - 13397956
Alignment:
| Q |
39 |
tcctaaaacgtggagcaattgcacatcacttgtggatttgtactcagaaaattgctgtgatggacttacctcctttcaactgaatggttttcatgtgctc |
138 |
Q |
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| T |
13397855 |
tcctgaaacatggagcaattacacatcacttgtgactttagagttaaaaaattgttgtgattcacttacctcctttcaactgaatggttttcctgtgctc |
13397954 |
T |
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| Q |
139 |
ca |
140 |
Q |
| |
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|| |
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| T |
13397955 |
ca |
13397956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 324
Target Start/End: Original strand, 13398621 - 13398734
Alignment:
| Q |
211 |
ccgctattaacagcaaggtatgccaatcggagaagtcgtcatgtgtccaagatcgctcacatccctgtcataaaaataaattatgaagtgataatatgag |
310 |
Q |
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| T |
13398621 |
ccgctgttaaaatcaaggtatgccactaagagaaatgatcatttgtccaagatctctcacatccctgtcgtaaaaataaatggtatagtgacaatatgag |
13398720 |
T |
|
| Q |
311 |
ccatggcaaaggaa |
324 |
Q |
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| T |
13398721 |
ccatcggaaaggaa |
13398734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 11778926 - 11778890
Alignment:
| Q |
255 |
gtccaagatcgctcacatccctgtcataaaaataaat |
291 |
Q |
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| T |
11778926 |
gtccaaaatcgctcacatccctgtcatagaaataaat |
11778890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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