View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_high_35 (Length: 306)
Name: NF3190_high_35
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 580914 - 581192
Alignment:
| Q |
10 |
attattctttagtgtttttaacaatgaatgtcatgatcttgaagtaatttatttttataataatgtagcacaagtaggataaatatttatgagtttaatc |
109 |
Q |
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| T |
580914 |
attattctttagtgtttttaacaatgaatgtcatgatcttgaagtaatttatttttataataatgtatcacaagtaggataaatatttatgagtttaatc |
581013 |
T |
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| Q |
110 |
cttttgttataatataaatcagtttcgttgcgtcatccattccaggttctggatctgaaaaagatgctaccaaaaaagctatgtgtatttccaatgttga |
209 |
Q |
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| T |
581014 |
cttttgttgtaatataaatcagtttcgttgtgtcatccattccaggttctggatctgaaaaagatgctaccaaaaaagctatgtgtatttccaatgttga |
581113 |
T |
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| Q |
210 |
cccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacacttgt |
288 |
Q |
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| T |
581114 |
cccatttggaggttggcttcgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacacttgt |
581192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 189 - 285
Target Start/End: Original strand, 1214741 - 1214837
Alignment:
| Q |
189 |
tatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacact |
285 |
Q |
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| T |
1214741 |
tatgtgtatttccaatgttggcccatttggatgttggcttacttagtgttgatattctgttagccttgcttgaaaagacaccggttctcaagacact |
1214837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 172 - 285
Target Start/End: Original strand, 1207516 - 1207629
Alignment:
| Q |
172 |
gatgctaccaaaaaagctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccg |
271 |
Q |
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| T |
1207516 |
gatgcaaccaaaagagctgtgcgtatttccaatgttgaccgatttggaggttggcttagttagtgtcgaaattctcttagcattacttcaaaagacacct |
1207615 |
T |
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| Q |
272 |
gttctcgagacact |
285 |
Q |
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| T |
1207616 |
gttctcaagacact |
1207629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 1201351 - 1201448
Alignment:
| Q |
188 |
ctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacact |
285 |
Q |
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| T |
1201351 |
ctatgtgtattttcaacgttgacacatttggaggttggcttgattagtgttgataatctcttggtcttactacaaaagacaccggttctcaagacact |
1201448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 285
Target Start/End: Complemental strand, 8188851 - 8188751
Alignment:
| Q |
185 |
aagctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctcttaaccttgcttcaaaaggcaccggttctcgagacac |
284 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||| ||| |||||||||||||| | ||||||||| |||||| |
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| T |
8188851 |
aagctatgtgtatttccaatgttgaccgatttggaggttggtttagttagtgttaatattctgttagccttgcttcaaaagacgccggttctcaagacac |
8188752 |
T |
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| Q |
285 |
t |
285 |
Q |
| |
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| T |
8188751 |
t |
8188751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 8188904 - 8188864
Alignment:
| Q |
120 |
aatataaatcagtttcgttgcgtcatccattccaggttctg |
160 |
Q |
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| T |
8188904 |
aatataaatcagtttcgttgtgccattcattccaggttctg |
8188864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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