View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_high_40 (Length: 288)
Name: NF3190_high_40
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 90 - 262
Target Start/End: Complemental strand, 16810466 - 16810294
Alignment:
| Q |
90 |
gaaattactctcgtgttgttacgtgaaatagatctatagaaaattaataattaaagtacatgttttcaatattacatgaaattagtttacaaacacattc |
189 |
Q |
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| T |
16810466 |
gaaattactctcgtgttgttacgtgaaatagatctatagaaaattaataattaaagtacatgttttcaatattacatgaaattagtttacaaacacattc |
16810367 |
T |
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| Q |
190 |
ttaaataaatttatgttacataaatgattgttttcatttctcataataaataagaggtctcaccggatgctct |
262 |
Q |
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| T |
16810366 |
ttaaataaatttatgttacataaatgattgttctcatttctcaaaataaataagaggtctcaccagatgctct |
16810294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 16810522 - 16810452
Alignment:
| Q |
3 |
tggagaagcaaaggaaaaaagattaatcatgtgattttgtttatttggagaaaaaggaaattactctcgtg |
73 |
Q |
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| T |
16810522 |
tggataaggaaagcaaaaaagattaatcatgtgattttgtttatttggagaaaaaggaaattactctcgtg |
16810452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 26821408 - 26821361
Alignment:
| Q |
210 |
taaatgattgttttcatttctcataataaataagaggtctcaccggat |
257 |
Q |
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| T |
26821408 |
taaataattgttctcatttctcacaataaataagagttctcaccggat |
26821361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 5365144 - 5365194
Alignment:
| Q |
207 |
acataaatgattgttttcatttctcataataaataagaggtctcaccggat |
257 |
Q |
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|||||||| | |||| |||||||||| |||||||||||| ||||||||||| |
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| T |
5365144 |
acataaataaatgttctcatttctcacaataaataagagttctcaccggat |
5365194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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