View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_high_42 (Length: 279)
Name: NF3190_high_42
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_high_42 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 32824164 - 32823895
Alignment:
| Q |
1 |
tctgaaatattgccatatttttgtacgcattgccaaaatataggtcattaagttgaaaatgttgaaaattgaaatctcaaaggtataaaccttcatgtta |
100 |
Q |
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| T |
32824164 |
tctgaaatattgccatatttttgtacgcattgccaaaatataggtcattaagttgaaaatgttgaaaattgaaatctcaaaggtataaaccttcatgtta |
32824065 |
T |
|
| Q |
101 |
attggagacactctttctttacctatcacaaagtacacggtttgttatctttaagttcaactaaaatttctttaaagtctcccgacttagagtcatcttc |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||||| |||||||||||| |
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| T |
32824064 |
atgggagacactctttctttacctatcacaaagtacacggtttgttat-tttaagttcaacaaatttttttttaaagtctcccgactcagagtcatcttc |
32823966 |
T |
|
| Q |
201 |
ttctaaaacttcaaaggaaacgaagttatcctttcttccttagagaattttggcactattttattcttctc |
271 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32823965 |
ttctaaaacttcaaaggaaacaaagttatcctttcttccttggagaattttggcactattttattcttctc |
32823895 |
T |
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