View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_high_47 (Length: 253)
Name: NF3190_high_47
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 11559561 - 11559343
Alignment:
| Q |
18 |
agtattaggacgcgtagggaattaattgtttgaattaattttagtccaatcaaactcagcaaaatgtatcttgaaccaaattaactgctctaactttttg |
117 |
Q |
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| T |
11559561 |
agtattaggacgcgtagggaattaattgtttgaattaattttagtccaatcaaactcagcaaaatgtatcttgaaccaaattaactgctctaactttttg |
11559462 |
T |
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| Q |
118 |
acaataaatcaatagctctaactgaaaacatagaaatagatcaattcatcattcatagagaaaagaccaaattcatgtattattataagatttaaaatgt |
217 |
Q |
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| T |
11559461 |
acaataaatcaatagctctaactgaaaacatagaaatagatcaattcatcattcatagagaaaagaccaaagtcatgtattattataagatttaaaatgt |
11559362 |
T |
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| Q |
218 |
caagcaaacttataacatc |
236 |
Q |
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| T |
11559361 |
caagcaaacttataacatc |
11559343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 11546036 - 11545881
Alignment:
| Q |
86 |
tcttgaaccaaattaactgctctaactttttga-caataaatcaatagctctaactgaaaaca------tagaaatagatcaattcatcattcatagaga |
178 |
Q |
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| T |
11546036 |
tcttgaaccaaattaacagctctaactttttgagcaataaattaacagctttaactgataacaataacatagaa-tagataaattcatcattcatagaaa |
11545938 |
T |
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| Q |
179 |
aaagaccaaattcatgtattattataagatttaaaatgtcaagcaaacttataacat |
235 |
Q |
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| T |
11545937 |
aaagaccaaagtcatgtattattatacgatttaaaatgtcaagcaaacttataacat |
11545881 |
T |
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