View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_high_54 (Length: 249)
Name: NF3190_high_54
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_high_54 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 18733355 - 18733132
Alignment:
| Q |
10 |
aagaatatggttaggttcttacgactcagccgtgaaggcggcgcgtgcatttgatgcggctatgttttgcttacgtggcagtggtgctaagtttaatttt |
109 |
Q |
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| T |
18733355 |
aagaatatggttaggttcttacgactcagccgtaaaggcggcgcgtgcatttgatgcggctatgttttgcttacgtggcagtggtgctaagtttaatttt |
18733256 |
T |
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| Q |
110 |
cctaatgatcctccgtacattgccggaggaaggtccatgacacattctgagattaagaccgctgcagcttcttttgctaattcgggtcaacccgaaaaga |
209 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18733255 |
cctaatgatcctccgtacattgccggaggaagatccatgacacatgctgagattaagaccgctgcagcttcttttgctaattcgggtcaacccgaaaata |
18733156 |
T |
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| Q |
210 |
cttcgtttgaaacaccgtcatcat |
233 |
Q |
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| T |
18733155 |
ctccgtttgaaacaccgtcatcat |
18733132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 18730585 - 18730362
Alignment:
| Q |
10 |
aagaatatggttaggttcttacgactcagccgtgaaggcggcgcgtgcatttgatgcggctatgttttgcttacgtggcagtggtgctaagtttaatttt |
109 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18730585 |
aagaatatggttaggttcttacgactcagccgtaaaggcggcgcgtgcattagaagcggctatgttttgcttacgtggcagtggtgctaagtttaattta |
18730486 |
T |
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| Q |
110 |
cctaatgatcctccgtacattgccggaggaaggtccatgacacattctgagattaagaccgctgcagcttcttttgctaattcgggtcaacccgaaaaga |
209 |
Q |
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| T |
18730485 |
cctaatgatcctccagaaattgcaggaggaaggtccatgacacattctgagattaagaccgctgcagcttcttttgctaattcgggtcaactcgaaaaga |
18730386 |
T |
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| Q |
210 |
cttcgtttgaaacaccgtcatcat |
233 |
Q |
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| T |
18730385 |
cttcgtttgaaacaccgtcatcat |
18730362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 18735923 - 18735735
Alignment:
| Q |
11 |
agaatatggttaggttcttacgactcagccgtgaaggcggcgcgtgcatttgatgcggctatgttttgcttacgtggcagtggtgctaagtttaattttc |
110 |
Q |
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||||||||||||||||| || ||||| | |||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18735923 |
agaatatggttaggttcctatgactccgacgtgaaggcggcacgtgcattcgacgcagctatgttttgcttacgtggcagtggtgctaagtttaattttc |
18735824 |
T |
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| Q |
111 |
ctaatgatcctccgtacattgccggaggaaggtccatgacacattctgagattaagaccgctgcagcttcttttgctaattcgggtcaa |
199 |
Q |
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| T |
18735823 |
ctaatgatcctccggagattgccggaggaaggtccatgacacattctgagattaagaccgcggcagcccgttttgccaattcgggtcaa |
18735735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 18743382 - 18743197
Alignment:
| Q |
11 |
agaatatggttaggttcttacgactcagccgtgaaggcggcgcgtgcatttgatgcggctatgttttgcttacgtggcagtggtgctaagtttaattttc |
110 |
Q |
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|||||||||||||||||||| || || |||| ||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||| || | |
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| T |
18743382 |
agaatatggttaggttcttatgattctgccgagaaggcggcgcgtgctttcgacgcggcgatgttttgcttacgtggcagtggtgctaagtttaacttcc |
18743283 |
T |
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| Q |
111 |
ctaatgatcctccgtacattgccggaggaaggtccatgacacattctgagattaagaccgctgcagcttcttttgctaattcgggt |
196 |
Q |
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|||||||||| || ||||||| |||||||| | ||||| | |||||||||| | | |||||||| |||||||||||||||| |
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| T |
18743282 |
ctaatgatccaccaaacattgctggaggaagaacaatgactccttctgagattcaagctgctgcagcccgttttgctaattcgggt |
18743197 |
T |
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