View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_high_58 (Length: 240)
Name: NF3190_high_58
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_high_58 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 51846815 - 51847018
Alignment:
| Q |
18 |
ggtcacttacatagggagaaaaattggatgcatgcatggctttatggaactactcgaacttctataaaccaaaaaccaaaagatgctgaagattggagtg |
117 |
Q |
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| T |
51846815 |
ggtcacttacatagggagaaaaattggatgcatgcatggctttatggaactgctcgaacttctataaaccaaaaaccaaaagatgctgaagattggagtg |
51846914 |
T |
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| Q |
118 |
ttttccatgttttggctccttttttgagttgaaaaatgtgaaagtacaagatcaattgaatggtgtgcctcttgtgctgtttatggcccttgtaaattaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51846915 |
ttttccatgttttggctccttttttgagttgaaaaatgtgaaagtacaagatcaattgaatggcgtgcctcttgtgctgtttatggcccttgtaaattaa |
51847014 |
T |
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| Q |
218 |
tgtg |
221 |
Q |
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|||| |
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| T |
51847015 |
tgtg |
51847018 |
T |
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