View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_high_60 (Length: 239)
Name: NF3190_high_60
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_high_60 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 25840867 - 25840647
Alignment:
| Q |
19 |
ggaacaccaccatggagaaattctattacacatgatgatcctacctctgctacacataattggattctttggggtgtagagtttgtggagttatcattgg |
118 |
Q |
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| T |
25840867 |
ggaacaccaccatggagaaattctattacacatgatgatcctacctctgctacacataattggattctttggggtgtagagtttgtggagttatcattgg |
25840768 |
T |
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| Q |
119 |
ctaatcaggagaatgttgaattgttgaatcaaattagttttgcttctatttcttcatttgattctcgtgatgaggttaatgattctgaattggtttcttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25840767 |
ctaatcaggagaatgttgaattgttgaatcaaattagttttgcttctatttcttcatttgattctcgtgatgaggttaatgattctgaattggtttcttc |
25840668 |
T |
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| Q |
219 |
tatgaagtctcggtcttcctt |
239 |
Q |
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||||||||||||||||||||| |
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| T |
25840667 |
tatgaagtctcggtcttcctt |
25840647 |
T |
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