View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3190_high_67 (Length: 233)
Name: NF3190_high_67
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_high_67 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 26737745 - 26737526
Alignment:
| Q |
1 |
ttttttgaaggaaagataaggtatc-atataggagggacaaaacttgtacatatatattgaatagaataatggtgtatagtcttaaatgatagtaatatt |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
26737745 |
ttttttgaaggaaagataaggtagatatataggagggacaaaacttgtacatatatattgaataaaataatggtgtatagtcttaaatggtagtaatatt |
26737646 |
T |
|
| Q |
100 |
tatcctctaggaacgaggatggttcattttatacgagttatatggtagaccatatttcaaaactattagattaaacaaatttccaagatcttatcatgga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26737645 |
tatcctctaggaacgaggatggttcattttatacgagttatatggtagaccatatttcaaaactattagattaaacaaatttccaagatcttatcatgga |
26737546 |
T |
|
| Q |
200 |
ttgtcggttgggttgaaaat |
219 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
26737545 |
ttgtcggttgggttgaaaat |
26737526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University