View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3190_high_72 (Length: 227)

Name: NF3190_high_72
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3190_high_72
NF3190_high_72
[»] chr3 (3 HSPs)
chr3 (22-217)||(47092716-47092894)
chr3 (1-79)||(47092621-47092699)
chr3 (22-79)||(47092679-47092736)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 47092716 - 47092894
Alignment:
Q  22 atttcaacaagactttccacgctacaaaccaaatattatttcaacaagactttccacgttagcatttcccttctctttatatcaactaaacaaacactca 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  47092716 atttcaacaagactttccacgctacaaaccaaatattatttcaacaagactttccacgttagcatttcccttctctttatatcaact------------- 47092802  T
Q  122 ccaaaaacacaatacctgctatatagtgcccttcaatagtattatttcaaattttttgttataaaattaaaaataaaaccttagaaattaatgtgt 217  Q
        ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47092803 ----aaacacaatacctactatatagtgcccatcaatagtattatttcaaattttttgttataaaattaaaaataaaaccttagaaattaatgtgt 47092894  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 47092621 - 47092699
Alignment:
Q  1 tacaatcacgtgcaaaagagaatttcaacaagactttccacgctacaaaccaaatattatttcaacaagactttccacg 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47092621 tacaatcacgtgcaaaagagaatttcaacaagactttccacgctacaaaccaaatattatttcaacaagactttccacg 47092699  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 47092679 - 47092736
Alignment:
Q  22 atttcaacaagactttccacgctacaaaccaaatattatttcaacaagactttccacg 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47092679 atttcaacaagactttccacgctacaaaccaaatattatttcaacaagactttccacg 47092736  T

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