View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_high_8 (Length: 635)
Name: NF3190_high_8
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 544; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 61 - 625
Target Start/End: Original strand, 40276154 - 40276714
Alignment:
| Q |
61 |
atagaatagaatgtgtacccaataaatttatatcaactgttgaataaatcttacaaatatactaaacgtgtgttgcattgcatgaatcacgtacatacct |
160 |
Q |
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| T |
40276154 |
atagaatagaatgtgtacccaataaatttatatcaactgttgaataaatcttacaaatatactaaacgtgtgttgcattgcatgaatcac----atacct |
40276249 |
T |
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| Q |
161 |
cagattcaaggcacgtacaagtagattcaatacaagcctcaagagctttaaactcaaaaggtaattgcttaggagccgacacaacgcctgcaatggcttt |
260 |
Q |
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| T |
40276250 |
cagattcaaggcacgtacaagtagattcaatacaagcctcaagagctttaaactcaaaaggtaattgcttaggagccgacacaacgcctgcaatggcttt |
40276349 |
T |
|
| Q |
261 |
cggtgaaccggcatcagatgcattgttaggagaatcatcgaacaaagttttcgcttcataatcaccatccacattattggcaatttggatattattagaa |
360 |
Q |
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| T |
40276350 |
cggtgaaccggcatcagatgcattgttaggagaatcatcgaacaaagttttcgcttcataatcaccatccacattattggcaatttggatattattagaa |
40276449 |
T |
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| Q |
361 |
ctattagagtgaggaagccgcgcttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcattggaagtgataattg |
460 |
Q |
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| T |
40276450 |
ctattagaatgaggaagccgcgcttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcattggaagtgataattg |
40276549 |
T |
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| Q |
461 |
cttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtagg |
560 |
Q |
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| T |
40276550 |
cttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtagg |
40276649 |
T |
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| Q |
561 |
taaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgtctctg |
625 |
Q |
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| T |
40276650 |
taaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgtctctg |
40276714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 384 - 620
Target Start/End: Original strand, 39625193 - 39625429
Alignment:
| Q |
384 |
ttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacg |
483 |
Q |
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| T |
39625193 |
ttgaagatcttgaagaaagcgaataaagaaagggtcaattgaattaatcataagcacttcattcgaagtgataatcgctctaatgtgttctaagttaaca |
39625292 |
T |
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| Q |
484 |
acaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatgg |
583 |
Q |
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| ||| ||||||||||||||||||||||||||||| | ||| || |||| ||||| ||||||||||||| | |||||| ||||||||| ||||||||| |
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| T |
39625293 |
ataatggctttttctcgtcctaagatagaagaaggctgagaaagctttgtatcaaagactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatgg |
39625392 |
T |
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| Q |
584 |
agtgtttgtcaatatcttcaacgcgtgattcacctgt |
620 |
Q |
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| T |
39625393 |
agtgtttgtcgatatcctcgacacgtgattcacctgt |
39625429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 384 - 620
Target Start/End: Original strand, 39634743 - 39634979
Alignment:
| Q |
384 |
ttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacg |
483 |
Q |
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| T |
39634743 |
ttgaagatcttgaagaaagcgaataaagaaagggtcaattgaattaatcataagcacttcattcgaagtgataatcgctctaatgtgttctaagttaaca |
39634842 |
T |
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| Q |
484 |
acaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatgg |
583 |
Q |
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| ||| ||||||||||||||||||||||||||||| | ||| || |||| ||||| ||||||||||||| | |||||| ||||||||| ||||||||| |
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| T |
39634843 |
ataatggctttttctcgtcctaagatagaagaaggctgagaaagctttgtatcaaagactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatgg |
39634942 |
T |
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| Q |
584 |
agtgtttgtcaatatcttcaacgcgtgattcacctgt |
620 |
Q |
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| T |
39634943 |
agtgtttgtcgatatcctcgacacgtgattcacctgt |
39634979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 39624950 - 39625037
Alignment:
| Q |
156 |
tacctcagattcaaggcacgtacaagtagattcaatacaagcctcaagagctttaaactcaaaaggtaattgcttaggagccgacaca |
243 |
Q |
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| T |
39624950 |
tacctcatattcaaggcaggtacaagcagattcaatacaagactcaagagctttgaactcaaacggaagctgcttaggagccgacaca |
39625037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 39634500 - 39634587
Alignment:
| Q |
156 |
tacctcagattcaaggcacgtacaagtagattcaatacaagcctcaagagctttaaactcaaaaggtaattgcttaggagccgacaca |
243 |
Q |
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||||||| |||||||||| ||||||| |||||||||||||| |||||||||||| |||||||| || | |||||||||||||||||| |
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| T |
39634500 |
tacctcatattcaaggcaggtacaagcagattcaatacaagactcaagagctttgaactcaaacggaagctgcttaggagccgacaca |
39634587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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