View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_18 (Length: 464)
Name: NF3190_low_18
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Original strand, 34768529 - 34768975
Alignment:
| Q |
18 |
aaagtcaataagatgtcattcttgatcgatacaatgtaaggttagtggcgaaggaatacacttagaacttataaggaaaaaattcttctattgctaagat |
117 |
Q |
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| T |
34768529 |
aaagtcaataagatgtcattcttgatcgatacaatgtaaggttagtggcgaaggaatacacttagaacttataaggaaaaaattcttctattgctaagat |
34768628 |
T |
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| Q |
118 |
gagcatggacaaattgaggatcactttatatgagctaaaatagtttccctagacatagttgggtacatttacaaaagcaatagtgtacttgggctacaat |
217 |
Q |
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| T |
34768629 |
gagcatggacaaattgaggatcacttcatatgagctaaaatagtttccctaaacatagttgggtacatttacaaaagcaatagtgtacttgggctacaat |
34768728 |
T |
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| Q |
218 |
caaaaccaaggatatatttttcttctaacattcacaattaagaaaactatacttcttatttatgttgatgatagatactcaacataacttcatcgggtta |
317 |
Q |
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| T |
34768729 |
caaaaccaaggatatatttttcttctaacattcacaattaagaaaactatacttcttttttatgttgatgatagatactcaacataacttcatcgggttg |
34768828 |
T |
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| Q |
318 |
gtatggaagtattgtactcactttcatcgtgtctaagtagtttattcatggaatgaatcacaccttaccttcatcgtgttatttgaacacacacatataa |
417 |
Q |
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| T |
34768829 |
gtatggaagtattgtattcactttcatcatgtttaagtagtttattcatgaaatgactcacaccttaacttcatcgtgttatttggacacacac--ataa |
34768926 |
T |
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| Q |
418 |
atgataaaatttaaaagatgaataataaagt--catcacttaatatcat |
464 |
Q |
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| T |
34768927 |
ataataaaatttaaaagatgaataataaagtcacatcacttaatatcat |
34768975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 450
Target Start/End: Complemental strand, 13843222 - 13843181
Alignment:
| Q |
409 |
cacatataaatgataaaatttaaaagatgaataataaagtca |
450 |
Q |
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| T |
13843222 |
cacatataaatgataaaatttaaaagagaaataataatgtca |
13843181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 435
Target Start/End: Original strand, 22227003 - 22227031
Alignment:
| Q |
407 |
cacacatataaatgataaaatttaaaaga |
435 |
Q |
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| T |
22227003 |
cacacatataaatgataaaatttaaaaga |
22227031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 450
Target Start/End: Complemental strand, 26911278 - 26911234
Alignment:
| Q |
406 |
acacacatataaatgataaaatttaaaagatgaataataaagtca |
450 |
Q |
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| T |
26911278 |
acacacacataaataataaaatttaaaagataaataattaagtca |
26911234 |
T |
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