View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3190_low_20 (Length: 422)
Name: NF3190_low_20
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 64 - 201
Target Start/End: Complemental strand, 2162762 - 2162625
Alignment:
| Q |
64 |
taattcaaatatgtatatgtatctcatgaatatttatacacatcattatatcgatgctcaagtgattgatgtagaacaaccaactaattcctctaatcca |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2162762 |
taattcaaatatgtatatgtatctcatgaatatttatacacatcattatagcgatgctcaagtgattgatgtagaacaacctactaattcctctaatcca |
2162663 |
T |
|
| Q |
164 |
agtaaccaaacaaggtactcaatccttttaattacctt |
201 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2162662 |
aataaccaaacaaggtactcaatccttttcattacctt |
2162625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 64 - 333
Target Start/End: Complemental strand, 2164751 - 2164497
Alignment:
| Q |
64 |
taattcaaatatgtatatgtatctcatgaatatttatacacatcattat---atcgatgctcaagtgattgatgtagaacaaccaactaattcctctaat |
160 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||| ||||| | ||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
2164751 |
taattgaaatatgtatatgtatctcatgaaaatttatacacattattattacagcgatgctcaagggattacggtagaacaaccaactaattcctctaat |
2164652 |
T |
|
| Q |
161 |
ccaagtaaccaaacaaggtactcaatccttttaattaccttctgaaaattattatttttctttgtggtttttaattactttcttgtagctcaaaacnnnn |
260 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| || | ||| ||||| ||||||| |||||||||||||||||||||| | ||||||| |
|
|
| T |
2164651 |
ccaaataaccaaacaaggtactcaatccttttcatgatctt----taatta----ctttctttttggtttttaattactttcttgtggttcaaaacaaaa |
2164560 |
T |
|
| Q |
261 |
nnnngctcataaaacaatgtatgtttgtatctaatcttaatctcatgaacacaatgataaatatttaggtatc |
333 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2164559 |
aaaagctcataaaataatgta----tgtatc------taatctcatgaacacaatgataaatatttaggtatc |
2164497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University