View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_24 (Length: 380)
Name: NF3190_low_24
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 23886637 - 23887008
Alignment:
| Q |
1 |
caccaccaaccttcatctctctcacattcctccaagctccatacggtaaacaccatagaccaggttggggtccaaatctctctccacctcttgcatggtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23886637 |
caccaccaaccttcatctctctcacattcctccaagctccatacggtaaacaccatagaccaggttggggtccaaatctctctccacctcttgcatggtt |
23886736 |
T |
|
| Q |
101 |
tctcatggaaagtcctactctttggttcaccctttatcttttcccacacggtagcaactcctcaaatccaaaatcaataatcctcataaccccttttctt |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23886737 |
tctcatggaaagtcctactctctggttcaccctttatcttttcccacacggtagcaactcctcaaatccaaaatcaataatcctcataaccccttttctt |
23886836 |
T |
|
| Q |
201 |
gttcattacttcaaccgcacaataatctaccctgttcgtttattcttcacaaaaacaacaaaaaacccatctgggtttccttttagtatagctgttatag |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23886837 |
gttcattacttcaaccgcacaataatctaccctcttcgtttattcttcacaaaaacaacaaaaaacccatctgggtttccttttagtatagctgttatag |
23886936 |
T |
|
| Q |
301 |
cttttttgttcaatttgttgaattcttttgttcaagctagatgggtttctcactacaaagattttgatgatg |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23886937 |
cttttttgttcaatttgttgaattcttttgttcaagctagatgggtttctcactacaaagattttgatgatg |
23887008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 24346288 - 24345918
Alignment:
| Q |
1 |
caccaccaaccttcatctctctcacattcctccaagctccatacggtaaacaccatagaccaggttggggtccaaatctctctccacctcttgcatggtt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24346288 |
caccaccaaccttcatctctctcacattcctccaagctccatacggtaaatactatcgacctggttggggtccaaatctctctccacctcttgcatggtt |
24346189 |
T |
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| Q |
101 |
tctcatggaaagtcctactctttggttcaccctttatcttttcccacacggtagcaactcctcaaatccaaaatcaataatcctcataaccccttttctt |
200 |
Q |
| |
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|||||||||||||| || || ||||| ||||||||||| || |||||||||| |||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
24346188 |
cctcatggaaagtccaacactctggtttaccctttatctctttccacacggtaaaaactcctcgaacccaaaatcaataatcctcataaccccttttctt |
24346089 |
T |
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| Q |
201 |
gttcattacttcaaccgcacaataatctaccctgttcgtttattcttcacaaaaacaacaaaaaacccatctgggtttccttttagtatagctgttatag |
300 |
Q |
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|||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
24346088 |
gttcattacttcaaccgcactgtcatctaccctcttcgtttatttctcacaaaaacaacaaaaaacccatctgggtttccttttagtattgctgttatgg |
24345989 |
T |
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| Q |
301 |
cttttttgttcaatttgttgaattcttttgttcaagctagatgggtttctcactacaaagattttgatgat |
371 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24345988 |
cttttttgttcaatttgttgaattcttttgttcaagctagatgggtctctcactacaaagattttgatgat |
24345918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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