View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_28 (Length: 374)
Name: NF3190_low_28
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 45954812 - 45954459
Alignment:
| Q |
14 |
accgtaaataatatatttttgaattaaggtttaggaaaataacttgtaaatttggtaggtaactttatttacaagaggaaaagcacctatcactcaacaa |
113 |
Q |
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| T |
45954812 |
accggaaataatatatttttgaattaaggtttaggaaaataacttgtaaatttggtaggtaactttattcacaagaggaaaagcacctatcactcaacaa |
45954713 |
T |
|
| Q |
114 |
ttgccaggtgaatcagacactgactttgctgatttttcttccaaggtatgctaattgtaaatgtaaacatcaaagctggatcattcactatttttgtaat |
213 |
Q |
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| T |
45954712 |
ttgccaggtgaatcagacactgactttgctgatttttcttccaaggtatgttaattgtaaatgtaaacatcaaagctgtttcattcactatttttgtaat |
45954613 |
T |
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| Q |
214 |
gtaatgtaatttatttttatttcatagatcttgcatttgaaaggagacaggaaagactatgattttgtaaaatctagtctctcagcagaaggatttgatg |
313 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45954612 |
gtaatgtaacttatttttatttcatagatcttgcatttgaaaggagacaggaaagactatgattttgtaaaatctagtctctcagcagaaggatttgatg |
45954513 |
T |
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| Q |
314 |
ttgtttatgacattaatggtatttagattcttaactctcacaccttctgtgctg |
367 |
Q |
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| T |
45954512 |
ttgtttatgacattaatggtatttagattcttaactttcacaccttctgtgctg |
45954459 |
T |
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