View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_29 (Length: 369)
Name: NF3190_low_29
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_29 |
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| [»] scaffold0606 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 51 - 362
Target Start/End: Complemental strand, 16783696 - 16783385
Alignment:
| Q |
51 |
tgattaattatggctactttcaactcaagaaagggagcaattttaagttcaaaagccatagctgaagcagcttcatggtattgtgctatttttcttgtag |
150 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16783696 |
tgattaataatggctactttcaactcaagaaagggagcaattttaagttcaaaagccatagctgaagcagcttcatggtattgtgctatttttcttgtag |
16783597 |
T |
|
| Q |
151 |
ccctcattcttctaagcatatatagagatagctctatgattccaaataataatgatcacaacatcatagagagcaaccatttcttgtcttccaaaccatg |
250 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16783596 |
ccctcattcttctaagcatatttagagatagctctatgattccaaataataatgatcacaacatgatagagagcaaccatttcttgtcttccaaaccatg |
16783497 |
T |
|
| Q |
251 |
cgacgaaatctatgtagttggtgaaggtgagacacttaacacaattagtgataagtgtaatgaccctttcattgttgagaataatcctcatatacatgat |
350 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16783496 |
cgacgaaatctatgtagttggtgaaggtgagacactaaacacaattagtgataagtgtaatgaccctttcattgttgagaataatcctcatatacatgat |
16783397 |
T |
|
| Q |
351 |
cctgatgatgtc |
362 |
Q |
| |
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|||||||||||| |
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| T |
16783396 |
cctgatgatgtc |
16783385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 67 - 362
Target Start/End: Complemental strand, 12618770 - 12618475
Alignment:
| Q |
67 |
ctttcaactcaagaaagggagcaattttaagttcaaaagccatagctgaagcagcttcatggtattgtgctatttttcttgtagccctcattcttctaag |
166 |
Q |
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|||||||||||||||||||| || ||||| ||||||||||||||||| ||| |||||||||||||| ||||| |||||||||| ||||| ||||||| |
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| T |
12618770 |
ctttcaactcaagaaagggacgaaaattaagctcaaaagccatagctgatgcaacttcatggtattgttctattgttcttgtagcactcatacttctaac |
12618671 |
T |
|
| Q |
167 |
catatatagagatagctctatgattccaaataataatgatcacaacatcatagagagcaaccatttcttgtcttccaaaccatgcgacgaaatctatgta |
266 |
Q |
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||| ||||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12618670 |
catttatagagatagctatatgattccaaatgatcatgatcacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgacgaaatctatgta |
12618571 |
T |
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| Q |
267 |
gttggtgaaggtgagacacttaacacaattagtgataagtgtaatgaccctttcattgttgagaataatcctcatatacatgatcctgatgatgtc |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
12618570 |
gttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatatacatgaccctgatgatgtc |
12618475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 57 - 362
Target Start/End: Complemental strand, 12631596 - 12631291
Alignment:
| Q |
57 |
attatggctactttcaactcaagaaagggagcaattttaagttcaaaagccatagctgaagcagcttcatggtattgtgctatttttcttgtagccctca |
156 |
Q |
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|||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||| || || | |
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| T |
12631596 |
attatggctattttcaactcaagaaagggagcagtttcaagttcaaaagccatagctgatgcagcttcatggtattgtgctattcttcttgcagaactta |
12631497 |
T |
|
| Q |
157 |
ttcttctaagcatatatagagatagctctatgattccaaataataatgatcacaacatcatagagagcaaccatttcttgtcttccaaaccatgcgacga |
256 |
Q |
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| ||||||| ||||| |||||| || | ||||||||||||| || ||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
12631496 |
tacttctaaccatatttagagacagttatatgattccaaatgatcatgattacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgacga |
12631397 |
T |
|
| Q |
257 |
aatctatgtagttggtgaaggtgagacacttaacacaattagtgataagtgtaatgaccctttcattgttgagaataatcctcatatacatgatcctgat |
356 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||| |
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| T |
12631396 |
aatctatgtggttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctgat |
12631297 |
T |
|
| Q |
357 |
gatgtc |
362 |
Q |
| |
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|||||| |
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| T |
12631296 |
gatgtc |
12631291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 16789580 - 16789660
Alignment:
| Q |
57 |
attatggctactttcaactcaagaaagggagcaattttaagttcaaaagccatagctgaagcagcttcatggtattgtgct |
137 |
Q |
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|||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
16789580 |
attatggctactttcaactcaataaagggaccaatttcaagtttaaaagccatagctgatgcagcttcatggtattgtgct |
16789660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 362
Target Start/End: Complemental strand, 19024970 - 19024861
Alignment:
| Q |
253 |
acgaaatctatgtagttggtgaaggtgagacacttaacacaattagtgataagtgtaatgaccctttcattgttgagaataatcctcatatacatgatcc |
352 |
Q |
| |
|
|||||||||| || || |||||||||||| |||| ||||| |||||||||||| | | |||||| |||||| ||||||||||||||||||| || || |
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| T |
19024970 |
acgaaatctacgtggtatgtgaaggtgagatgcttagcacaaatagtgataagtgcgacggcccttttattgttaagaataatcctcatatacacgaccc |
19024871 |
T |
|
| Q |
353 |
tgatgatgtc |
362 |
Q |
| |
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|||||||||| |
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| T |
19024870 |
tgatgatgtc |
19024861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 20729666 - 20729775
Alignment:
| Q |
253 |
acgaaatctatgtagttggtgaaggtgagacacttaacacaattagtgataagtgtaatgaccctttcattgttgagaataatcctcatatacatgatcc |
352 |
Q |
| |
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|||||||||| || || |||||||||||| |||| ||||| |||||||||||| | | |||||| |||||| ||||||||||||||||||| || || |
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| T |
20729666 |
acgaaatctacgtggtatgtgaaggtgagatgcttagcacaaatagtgataagtgcgacggcccttttattgttaagaataatcctcatatacacgaccc |
20729765 |
T |
|
| Q |
353 |
tgatgatgtc |
362 |
Q |
| |
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|||||||||| |
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| T |
20729766 |
tgatgatgtc |
20729775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 19025108 - 19025032
Alignment:
| Q |
67 |
ctttcaactcaagaaagggagc---aattttaagttcaaaagccatagctgaagcagcttcatggtattgtgctatt |
140 |
Q |
| |
|
|||||| ||||||||||||| | ||| ||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
19025108 |
ctttcagctcaagaaagggacccttaatcttaagttcaaaagccatagttggtgcagcttcatggtattgtgctatt |
19025032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 20729528 - 20729604
Alignment:
| Q |
67 |
ctttcaactcaagaaagggagc---aattttaagttcaaaagccatagctgaagcagcttcatggtattgtgctatt |
140 |
Q |
| |
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|||||| ||||||||||||| | ||| ||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
20729528 |
ctttcagctcaagaaagggacccttaatcttaagttcaaaagccatagttggtgcagcttcatggtattgtgctatt |
20729604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0606 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0606
Description:
Target: scaffold0606; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 7027 - 7064
Alignment:
| Q |
179 |
tagctctatgattccaaataataatgatcacaacatca |
216 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||| |
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|
| T |
7027 |
tagctctatgattccaaataatcatgatcacaacatca |
7064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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