View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3190_low_3 (Length: 847)

Name: NF3190_low_3
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3190_low_3
NF3190_low_3
[»] chr4 (13 HSPs)
chr4 (115-840)||(8556707-8557414)
chr4 (467-838)||(8594199-8594583)
chr4 (222-586)||(8555557-8555898)
chr4 (321-724)||(8611709-8612115)
chr4 (343-728)||(8646531-8646919)
chr4 (343-727)||(8566903-8567316)
chr4 (25-92)||(8582442-8582509)
chr4 (25-92)||(8594809-8594876)
chr4 (115-271)||(8594586-8594741)
chr4 (17-91)||(8556542-8556616)
chr4 (369-487)||(8588867-8588988)
chr4 (763-838)||(8566784-8566860)
chr4 (415-493)||(8632868-8632946)


Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 115 - 840
Target Start/End: Original strand, 8556707 - 8557414
Alignment:
Q  115 tgccagacagaccactagattattaaattgattttgtaaagcggtcgaatttcgaccttgtgtgatagcatctgatgtttagtttaggtcgaggttttgg 214  Q
    ||||| ||| |||||| |||||||||| |||||||||||||  | |||| || |||||| ||   ||||||| |  |||| |||||||| ||||||||||    
T  8556707 tgccatacaaaccacttgattattaaactgattttgtaaagacgacgaaattggaccttatgc--tagcatccgcggtttggtttaggt-gaggttttgg 8556803  T
Q  215 tcccagacc-gactgaatgtccaagtaacacttattctaaaatagatgaaatagtaattataatatttataattagcaaccgaggaattaacaggtctca 313  Q
     | |  ||| |||| ||| ||||||||||||||||| | |||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||    
T  8556804 gctcgcacccgacttaatctccaagtaacacttattttgaaatagatgaaataataataataatatttataattagcaaccaaggaattaacaggtctca 8556903  T
Q  314 aattagtccttccattaacacgtgtcaactgtggattggagctatcacaataaatctttgattagcaaaactcattctcatctcatttgtccttcttttg 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8556904 aattagtccttccattaacacgtgtcaactgtggattggagctatcacaataaatctttgattagcaaaactcattctcatctcatttatccttcttttg 8557003  T
Q  414 aatttgaataggcacatgactcatgacattagaggcttgtttgtgagtatgtgcattctatttttgaaccgtttttctcatactttcccttacgtctcat 513  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8557004 aatttgaataggcacatgactcatgacattggaggcttgtttgtgagtat-tgcattctatttttgaaccgtttttctcatacttccccttacgtctcat 8557102  T
Q  514 ttctcacccaagaaaatcatgcctatcacatgtcttctgctcgcaaccaaacaaacacattttttgttctcagtactgttagttggcattttcttcataa 613  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||    
T  8557103 ttctcacccaagaaaataatgcctatcacatgtcttctgctcgcaaccaaacaaacaca------------------gttagttggcattttcttcataa 8557184  T
Q  614 aaaagtggcataaactctagacttctactg--atatataaaaataggagaggcaaggaagggtagagaagaagagtaacaaaatgaataacacttgttcc 711  Q
    | | ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||||    
T  8557185 atatgtggcataaactctagaattctactgatatatataaaaataggagaggcaaggaagggtagagaagaagagtagcaaaaagaatcacacttattcc 8557284  T
Q  712 tctcaaacaccacatcaat-nnnnnnnnnnnnttctaccacttaaactgccaatcctccttgtttagccgcgcaccaccacagtcaaagatccagcgatc 810  Q
    |||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8557285 tctcaaacaccacatcaataaaaaaaaaaaaactctaccacttaaactgccaatcctccttgtttagccgcgcaccaccacagtcaaagatccagcgatc 8557384  T
Q  811 ttcatgtccactgtctttctttttcctttg 840  Q
    |||| |||||||||||||||||||||||||    
T  8557385 ttcacgtccactgtctttctttttcctttg 8557414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 467 - 838
Target Start/End: Complemental strand, 8594583 - 8594199
Alignment:
Q  467 cattctatttttgaaccgtttttctcatactttcccttacgtctcatttctcacccaagaaaatcatgcctatcacatgtcttctgctcgcaaccaaaca 566  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||    
T  8594583 cattctatttttgaaccgtttttctcatactttcccttacgtctcatttctcacccaagaaaatcatgcctatcacatgtttt--gctcgcaaccaaaca 8594486  T
Q  567 aacac---------------attttttg-ttctcagtact--gttagttggcattttcttcataaaaaagtggcataaactctagacttctactgatata 648  Q
    |||||               |||||||| ||||||||||   ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8594485 aacactgcatgaaaatacacattttttggttctcagtacacagttagttggcattttcttcataaaaaagtggcataaactttagacttctactgatata 8594386  T
Q  649 taaaaataggagaggcaaggaagggtagagaagaagagtaacaaaatgaataacacttgttcctctcaaacaccacatcaatnnnnnnnnnnnnttctac 748  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||    
T  8594385 taaaaataggagaggcaaggatgggtagagaagaagagtaacaaaatgaataacacttgttcctctcaaacaccacatcaatgaaaaaaaac---tctac 8594289  T
Q  749 cacttaaactgccaatcctccttgtttagccgcgcaccaccacagtcaaagatccagcgatcttcatgtccactgtctttctttttcctt 838  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  8594288 gacttaaactgccaatcctccttgtttagccgcgcaccaccacagtcaaagatccagagatcttcacgtccactgtctttctttttcctt 8594199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 222 - 586
Target Start/End: Complemental strand, 8555898 - 8555557
Alignment:
Q  222 ccgactgaatgtccaagtaacacttattctaaaatagatgaaatagtaattataatatttataattagcaaccgaggaattaacaggtctcaaattagtc 321  Q
    |||||||||||||||||| ||||||||| |||||||||||||||| ||||   || ||||||||||| ||| |||||||||||  |||         |||    
T  8555898 ccgactgaatgtccaagttacacttattttaaaatagatgaaataataat---aacatttataattatcaatcgaggaattaaggggt---------gtc 8555811  T
Q  322 cttccattaacacgtgtcaactgtggattggagctatcacaataaatctttgattagcaaaactcattctcatctcatttgtccttcttttgaatttgaa 421  Q
    |||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8555810 cttccattaacacgtgtccactgtggattggagctatcacaataaccctttgattagcaaaactcattctcatctcatttgtccttcatttgaatttgaa 8555711  T
Q  422 taggcacatgactcatgacattagaggcttgtttgtgagtatgtgcattctatttttgaaccgtttttctcatactttcccttacgtctcatttctcacc 521  Q
    |||||||||||||||||||||| |||||||||||||         | |||   |||||||||||||||||||||||| ||||||||||||||||||||||    
T  8555710 taggcacatgactcatgacattggaggcttgtttgt---------ccttc--attttgaaccgtttttctcatacttccccttacgtctcatttctcacc 8555622  T
Q  522 caagaaaatcatgcctatcacatgtcttctgctcgcaaccaaacaaacacattttttgttctcag 586  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8555621 caagaatatcatgcctatcacatgtcttctgctcgcaaccaaacaaacacattttttgttctcag 8555557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 321 - 724
Target Start/End: Original strand, 8611709 - 8612115
Alignment:
Q  321 ccttccattaacacgtgtcaactgtggattggagctatcacaataaatctttgattagcaaaactcattctcatctcatttgtccttcttttgaatttga 420  Q
    ||||||||| ||||||||| | |||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8611709 ccttccattgacacgtgtccattgtggattggagctatcatagtaaacctttgattagcaaaactcattctcatctcatttgtccttctattgaatttga 8611808  T
Q  421 ataggcacatgactcatgacattagaggcttgtttgtgagtatgtgcattctatttttgaaccgtttttctcatactttcccttacgtctcatttctcac 520  Q
    |||  |||||||||||| |||||              || ||  | ||||||||||||||||||||||||||||||||||||| |||||||| || | ||    
T  8611809 ataaacacatgactcataacatt--------------gaatagttacattctatttttgaaccgtttttctcatactttccctcacgtctcacttattac 8611894  T
Q  521 ccaagaaaatcatgcctatcacatgtcttctgctcgcaaccaaacaaacac---------------attttttg-ttctcagtact--gttagttggcat 602  Q
    |||||||||||||||||||||||||| ||  ||||||||||||||||||||               |||||||| ||||||||||   ||||||||||||    
T  8611895 ccaagaaaatcatgcctatcacatgtttt--gctcgcaaccaaacaaacacttcatgaaaaaacacattttttggttctcagtacacagttagttggcat 8611992  T
Q  603 tttcttcataaaaaagtggcataaactctagacttctactgatatataaaaat-aggagaggcaaggaagggtagagaagaagagtaacaaaatgaataa 701  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||| ||||| ||||||    
T  8611993 tttcttcataaaaatgtggcctaaactctagacttctattgatatataaaaattaggagaggcaaggaagggtagagaagaatagtagcaaaaagaataa 8612092  T
Q  702 cacttgttcctctcaaacaccac 724  Q
    ||||||||||| |||||||||||    
T  8612093 cacttgttcctttcaaacaccac 8612115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 343 - 728
Target Start/End: Complemental strand, 8646919 - 8646531
Alignment:
Q  343 tgtggattggagctatcacaataaatctttgattagcaaaactcattctcatctcatttgtccttcttttgaatttgaataggcacatgactcatgacat 442  Q
    |||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||| ||||    
T  8646919 tgtggattggagctatcataataaacctttgattaacaaaactcattctcatctcatttgtccttctattgaatttgaataaacacatgactcataacat 8646820  T
Q  443 tagaggcttgtttgtgagtatgtgcattctatttttgaaccgtttttctcatactttcccttacgtctcatttctcacccaagaaaatcatgcctatcac 542  Q
    |              || ||  | ||||||||||||||||||||||||||||||||||||| |||||||| || | ||||||||||||||||||||||||    
T  8646819 t--------------gaatagatacattctatttttgaaccgtttttctcatactttccctcacgtctcacttattacccaagaaaatcatgcctatcac 8646734  T
Q  543 atgtcttctgctcgcaaccaaacaaacac---------------attttttg-ttctcagtact--gttagttggcattttcttcataaaaaagtggcat 624  Q
    |||| ||  ||||||||||||||||||||               |||||||| ||||||||||   |||||||||||||||||||||||||| |||||||    
T  8646733 atgtttt--gctcgcaaccaaacaaacacttcatgaaaaaacacattttttggttctcagtacacagttagttggcattttcttcataaaaatgtggcat 8646636  T
Q  625 aaactctagacttctactgatatataaaaa-taggagaggcaaggaagggtagagaagaagagtaacaaaatgaataacacttgttcctctcaaacacca 723  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||||    
T  8646635 aaactctagacttctattgatatataaaaattaggagaagcaaggaagggtagagaagaatagtagcaaaaagaataacacttgttcctttcaaacacca 8646536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 343 - 727
Target Start/End: Complemental strand, 8567316 - 8566903
Alignment:
Q  343 tgtggattggagctatcacaataaatctttgattagcaaaactcattctcatctcatttgtccttcttttgaatttgaataggcac----atgactcatg 438  Q
    |||||| || ||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||| ||||| | |||||||    ||||||||||    
T  8567316 tgtggactgaagctatcacaataaccctttgattaggaaaactcattctcatctcatttgtccttctttttaatttcattaggcacatgtatgactcatg 8567217  T
Q  439 acattagaggcttgtttgtgagtatgtgcattctatttttgaaccgtttttctcatactttcccttacgtctcatttctcacccaagaaaatcatgccta 538  Q
    ||||| || |||||||| ||||||||   |||||||||||||||||||||||| ||||||||||| ||  ||||| | | ||| ||||||||||||||||    
T  8567216 acattggatgcttgtttatgagtatgcaaattctatttttgaaccgtttttcttatactttccctcac-actcatatattaccaaagaaaatcatgccta 8567118  T
Q  539 tcacatgtcttctgctcgcaaccaaacaaacac--------------------attttttgttctcagtactgttagttggcattttcttcataaaaaag 618  Q
    |||||||| ||||||||||||||||||||||||                     |||||||||| |||||| |||||||||||||||||||||||||| |    
T  8567117 tcacatgtgttctgctcgcaaccaaacaaacacttcataaaaaaaaaaactcatttttttgttcccagtacagttagttggcattttcttcataaaaatg 8567018  T
Q  619 tggc--ataaactctagacttctactgat----atataaaaataggagaggcaaggaagggtagagaagaagagtaacaaaatgaataacacttgttcct 712  Q
    ||||  |||||||||||||||||||   |    |||||||||||||||||| ||||||||||||||||||| |||| ||||| ||| |||| |||||| |    
T  8567017 tggcatataaactctagacttctacatctactgatataaaaataggagagggaaggaagggtagagaagaatagtagcaaaaagaacaacagttgttcat 8566918  T
Q  713 ctcaaacaccacatc 727  Q
    || ||||||||||||    
T  8566917 ctaaaacaccacatc 8566903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 8582509 - 8582442
Alignment:
Q  25 ggaatattatgagctattctaagttaatttgtgtatggtattattgaacttagcagtacacagtaata 92  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  8582509 ggaatattatgagctatcctaagttaatttgtgtatggtattattgaacttagtagtacatagtaata 8582442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 8594876 - 8594809
Alignment:
Q  25 ggaatattatgagctattctaagttaatttgtgtatggtattattgaacttagcagtacacagtaata 92  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||  |||||||    
T  8594876 ggaatattatgagctatcctaagttaatttgtgtatggtattattgaacttagtagtacctagtaata 8594809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 115 - 271
Target Start/End: Complemental strand, 8594741 - 8594586
Alignment:
Q  115 tgccagacagaccactagattattaaattgattttgtaaagcggtcgaatttcgaccttgtgtgatagcatctgatgtttagtttaggtcgaggttttgg 214  Q
    ||||| ||| ||||| ||||||| ||| ||||||||||||||||   || |  |||||||||  | ||||||||  ||||||||||||||| ||||||||    
T  8594741 tgccatacaaaccaccagattatcaaactgattttgtaaagcggataaaatcggaccttgtg--acagcatctgcggtttagtttaggtcgtggttttgg 8594644  T
Q  215 tcccagacc-gactgaatgtccaagtaacacttattctaaaatagatgaaatagtaat 271  Q
     | || ||| |||||||||||||||| ||||||||| | |||||||||||||| ||||    
T  8594643 cctcacacccgactgaatgtccaagttacacttattttgaaatagatgaaataataat 8594586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 8556542 - 8556616
Alignment:
Q  17 gaattatgggaatattatgagctattctaagttaatttgtgtatggtattattgaacttagcagtacacagtaat 91  Q
    ||||||||||||||| || |||||| | ||||| |||||||||||||| |||||||||||| |||||| ||||||    
T  8556542 gaattatgggaatatcataagctatccaaagttgatttgtgtatggtactattgaacttagtagtacatagtaat 8556616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 369 - 487
Target Start/End: Complemental strand, 8588988 - 8588867
Alignment:
Q  369 ctttgattagcaaaactcattctcatctcatttgtccttcttttgaatttgaataggcacatgactcatgacattagaggcttgtttgtgagtat-gtg- 466  Q
    |||| |||| |||||||||| |||||||||| ||| ||||||||||||||||||  |||||||   |||| |||| ||  ||||||||||||||| |||     
T  8588988 cttttattaccaaaactcatcctcatctcatatgttcttcttttgaatttgaattagcacatggagcatggcattggattcttgtttgtgagtatggtgc 8588889  T
Q  467 -cattctatttttgaaccgttt 487  Q
     |||||||||||||| ||||||    
T  8588888 acattctatttttgagccgttt 8588867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 763 - 838
Target Start/End: Complemental strand, 8566860 - 8566784
Alignment:
Q  763 atcctccttgtttagccgcgcaccaccacagtcaaag-atccagcgatcttcatgtccactgtctttctttttcctt 838  Q
    ||||||||||||||||||| |||| |||| ||||||| ||||| ||| || |||||||| |||||||||||||||||    
T  8566860 atcctccttgtttagccgcacaccgccaccgtcaaagaatccaacgacctccatgtccattgtctttctttttcctt 8566784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 415 - 493
Target Start/End: Complemental strand, 8632946 - 8632868
Alignment:
Q  415 atttgaataggcacatgactcatgacattagaggcttgtttgtgagtatgtgcattctatttttgaaccgtttttctca 493  Q
    |||| |||||||||||   ||||| |||| || |||||||||||||||||| ||||||| || ||||||||||||||||    
T  8632946 atttcaataggcacatcggtcatggcattggatgcttgtttgtgagtatgtacattctacttctgaaccgtttttctca 8632868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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