View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_30 (Length: 364)
Name: NF3190_low_30
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 352
Target Start/End: Original strand, 34768968 - 34769304
Alignment:
| Q |
13 |
aatatcatttcactttttaattttatcatttatgtatttgtgtcaaatgaatttatttaagttattgtctatataagagttgctccagattatagcgact |
112 |
Q |
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| T |
34768968 |
aatatcatttcactttttaattttatcatttatgtatttgtgccaagtgaatttatttaagttattgtctatgtaagagttgctccaaat---agcgact |
34769064 |
T |
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| Q |
113 |
actttttcagcttcatcggattctggatacatctgactcaagccccacacttcccgagaccatatatttcttattgtatgtccttgaagacatgcattac |
212 |
Q |
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| T |
34769065 |
actttttcagcttcatcggattctggatacatctggctcgagccccacacttcccgagaccatatatttcttattgtatgtccttgaagacatgcattac |
34769164 |
T |
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| Q |
213 |
tttagttgcaaccttattttgttgccaaaagttccttcatatacatgtgtagggaaaaaggagaggagaaggaagggtaaatgtgatagaggagtgagga |
312 |
Q |
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| T |
34769165 |
tttcgttgcaaccttattttgttgccaaaagttccttcatatacatgtgtagggaaaaaggagaggagaaggaagggtaaatgtgatagaggagtgagga |
34769264 |
T |
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| Q |
313 |
tgacaaataggtttggcctgatatagtgaaaattgatatt |
352 |
Q |
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| T |
34769265 |
tgacaaataggtttggcatgatatagtgaaaattgatatt |
34769304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 13858448 - 13858367
Alignment:
| Q |
19 |
atttcactttttaattttatcatttatgtatttgtgtc-aaatgaatttatttaagttattgtctatataagagttgctcca |
99 |
Q |
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| T |
13858448 |
atttcacttttaaattttatgattcatgtgtatgtgtcgaaatgaatttatttaggtttatgtctatataagagttgctcca |
13858367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 13843172 - 13843084
Alignment:
| Q |
13 |
aatatcatttcactttttaattttatcatttatgtatttgtgtc-aaatgaa-tttatttaagttattgtctatataagagttgctcca |
99 |
Q |
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| T |
13843172 |
aatattatttcacttttaaattttatgatctatgtgtgtgtatcgaaataaactttatttaggtttatgtctatataagagttgctcca |
13843084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 16461444 - 16461480
Alignment:
| Q |
13 |
aatatcatttcactttttaattttatcatttatgtat |
49 |
Q |
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| T |
16461444 |
aatatcatttcacttttaaattttatcatctatgtat |
16461480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 26911225 - 26911140
Alignment:
| Q |
13 |
aatatcatttcactttttaattttatcatttatgtatttgtg-tcaaatgaattt-atttaagttattgtctatataagagttgct |
96 |
Q |
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|||| |||||||||||| |||||||| || |||||||||||| |||||||||||| ||||| ||| | ||| ||||||||||||| |
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| T |
26911225 |
aataacatttcacttttaaattttattatctatgtatttgtgttcaaatgaatttaatttaggtttgtctctctataagagttgct |
26911140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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