View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_33 (Length: 328)
Name: NF3190_low_33
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 62 - 312
Target Start/End: Original strand, 55263569 - 55263819
Alignment:
| Q |
62 |
ttcgattgttaccttttcataaaactttatggcacgttctaaatcaccaacgcgaagacttatttgacagaatgggtcgtgaactataggtctttggaca |
161 |
Q |
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| T |
55263569 |
ttcgattgttaccttttcataaaactttatggcacgttctaaatcaccaacgcgaagacttatttgacagaatgggtcgtgaactataggtctttggaca |
55263668 |
T |
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| Q |
162 |
agtgcaaaagtgtagccatcaggatccttcacaaaggcaataacagttgtcccaccctgaactggaccagcctcccttgtgatatttccacctttagcac |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263669 |
agtgcaaaagtgtagccatcaggatccttcacaaaggcaataacagttgtcccaccttgaactggaccagcctcccttgtgatatttccacctttagcac |
55263768 |
T |
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| Q |
262 |
gaatgtgctcaaccaatttgtaaacctaaaataaaaattgaagcaatgtta |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263769 |
gaatgtgctcaaccaatttgtaaacctaaaataaaaattgaagcaatgtta |
55263819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 62 - 312
Target Start/End: Original strand, 55270433 - 55270683
Alignment:
| Q |
62 |
ttcgattgttaccttttcataaaactttatggcacgttctaaatcaccaacgcgaagacttatttgacagaatgggtcgtgaactataggtctttggaca |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
55270433 |
ttcgattgttaccttttcataaaactttatggcacgttctaaatcaccaacgcggagacttatttgacagaatgggtcgtgaactataggtctttgaaca |
55270532 |
T |
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| Q |
162 |
agtgcaaaagtgtagccatcaggatccttcacaaaggcaataacagttgtcccaccctgaactggaccagcctcccttgtgatatttccacctttagcac |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
55270533 |
agtgcaaaagtgtagccatcaggatccttcacaaaggcaataacagttgtcccaccttgaactggaccagcctcccttgtgatgtttccacctttagcac |
55270632 |
T |
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| Q |
262 |
gaatgtgctcaaccaatttgtaaacctaaaataaaaattgaagcaatgtta |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270633 |
gaatgtgctcaaccaatttgtaaacctaaaataaaaattgaagcaatgtta |
55270683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 292
Target Start/End: Original strand, 8302517 - 8302632
Alignment:
| Q |
177 |
ccatcaggatccttcacaaaggcaataacagttgtcccaccctgaactggaccagcctcccttgtgatatttccacctttagcacgaatgtgctcaacca |
276 |
Q |
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||||||||||| |||||||||||||||| ||||||| || ||||||||||| |||||| |||| |||||||| ||||| || || ||||| | |
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| T |
8302517 |
ccatcaggatcagccacaaaggcaataacacttgtcccgccactaactggaccaggctccctagtgacttttccacccttagcccgggcgttttcaacaa |
8302616 |
T |
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| Q |
277 |
atttgtaaacctaaaa |
292 |
Q |
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||||||| |||||||| |
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| T |
8302617 |
atttgtagacctaaaa |
8302632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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