View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_35 (Length: 310)
Name: NF3190_low_35
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 51846548 - 51846851
Alignment:
| Q |
1 |
attaggaggatagaggaattacaagtttaaagatgaatatgatcaatttttatgtcaatgtcaatgtcaatgtcaatatgctagcttagtatgtaacagt |
100 |
Q |
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| T |
51846548 |
attaggaggatagaggaattacaagtttaaagatgaatatgatcaatttttatgt------caatgtcaatgtcaatatgctagcttagtatgtaacagt |
51846641 |
T |
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| Q |
101 |
tgcttttgtaggtgagagttgcagtcctaggaaagattaattaattcaattgattcagcatcttgaaccaacaatgaagtattcatgaatgatcctctca |
200 |
Q |
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| T |
51846642 |
tgcttttgtaggtgagagttgcagtcctaggaaagattaattaattcaattgattcagcatcttgaaccaacaatgaagtattcatgaatgatcctctca |
51846741 |
T |
|
| Q |
201 |
aagcttagcggtgaacaatgagttttgcacaacactacatatattaaagggcatctatagaggaagnnnnnnnggacacttacatatggagaaaaattgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||| |
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| T |
51846742 |
aagcttagcggtgaacaatgagttttgcacaacactacatatattaaagggcatctatagaggaagaaaaaaaggtcacttacatagggagaaaaattgg |
51846841 |
T |
|
| Q |
301 |
atgcatgcat |
310 |
Q |
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| T |
51846842 |
atgcatgcat |
51846851 |
T |
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