View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_36 (Length: 310)
Name: NF3190_low_36
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 23626039 - 23626334
Alignment:
| Q |
1 |
acaaatctaacacttttggcacatgttctatacgtgaggaccattgagagcgttattcttgaagtttatttgaatggtatagaatatctcaatttgttga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23626039 |
acaaatctaacacttttggcacatgttctatacgtgaggaccattgagagcgttattcttgaagtttatttgaatggtatagaatatctcaatttgttga |
23626138 |
T |
|
| Q |
101 |
ggacaagcccataattatcaccgcaggcaggaggaccattttaggaacactttcaacactaggtgtcggtcacattaataagcatcgtttgtgatagtac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23626139 |
ggacaagcccataattatcaccgcaggcaggaggaccattttaggaacactttcaacactaggtgtcggtcacattaataagcatcgtttgtgatagtac |
23626238 |
T |
|
| Q |
201 |
ttgatgtagagttcgaggagcggaaatcgactaaaccgtcaaggatgttaagacgccttaacatcacatctctaccgaacaacttaatccattagg |
296 |
Q |
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| T |
23626239 |
ttgatgtagagttcgaggagcggaaatcgactaaaccgtcaaggatgttaagacgccttaacatcacatctctaccgaacaacttaatccattagg |
23626334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 23615262 - 23615403
Alignment:
| Q |
1 |
acaaatctaacacttttggcacatgttctatacgtgaggaccattgagagcgttattcttgaagtttatttgaatggtatagaatatctcaatttgttga |
100 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23615262 |
acaaatgtaacacttttggcagatgttctatacgtgaggaccattaagagtgttattcttgaagtttatttgaacggtatagaatatctcaatttgttga |
23615361 |
T |
|
| Q |
101 |
ggacaagcccataattatcaccgcaggcaggaggaccatttt |
142 |
Q |
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| T |
23615362 |
ggacaagcccataattgtcacggtcgggaggagggccatttt |
23615403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 23579082 - 23579195
Alignment:
| Q |
3 |
aaatctaacacttttggcacatgttctatacgtgaggaccattgagagcgttatt-cttgaagtttatttgaatggtatagaatatctcaatttgttgag |
101 |
Q |
| |
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|||||||| ||||| || | |||||||||||||||| ||||||||||| ||| || |||||||||||||||||||||| ||||||||| ||| |||||| |
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| T |
23579082 |
aaatctaagactttgggaagatgttctatacgtgag-accattgagagtgttctttcttgaagtttatttgaatggtagagaatatctttattggttgag |
23579180 |
T |
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| Q |
102 |
gacaagcccataatt |
116 |
Q |
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||||||||||||||| |
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| T |
23579181 |
gacaagcccataatt |
23579195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 23607881 - 23607981
Alignment:
| Q |
3 |
aaatctaacacttttggcacatgttctatacgtgaggaccattgagagcgttattcttgaagtttatttgaatggtatagaatatctcaatttgttgagg |
102 |
Q |
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||||||| ||| |||||| |||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
23607881 |
aaatctattactattggcagatgttctatacgcgaggaccattgaaata-ttattcttgatggttatttgaatggtatagaatatctcaatttgttgagg |
23607979 |
T |
|
| Q |
103 |
ac |
104 |
Q |
| |
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|| |
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|
| T |
23607980 |
ac |
23607981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 152 - 271
Target Start/End: Original strand, 23616740 - 23616859
Alignment:
| Q |
152 |
ttcaacactaggtgtcggtcacattaataagcatcgtttgtgatagtacttgatgtagagttcgaggagcggaaatcgactaaaccgtcaaggatgttaa |
251 |
Q |
| |
|
|||||||| |||||| |||||| |||||||||| || |||||||| |||||| ||| |||||| ||||||| ||| | |||||| ||||| ||||||| |
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| T |
23616740 |
ttcaacacgaggtgttggtcactttaataagcaacggttgtgatactacttgttgttgagttcagggagcggcaattggataaaccttcaagaatgttaa |
23616839 |
T |
|
| Q |
252 |
gacgccttaacatcacatct |
271 |
Q |
| |
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|||||||||||| ||||||| |
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| T |
23616840 |
gacgccttaacaccacatct |
23616859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 23620126 - 23620228
Alignment:
| Q |
1 |
acaaatctaacacttttggcacatgttctatacgtgaggaccattgagagcgttattcttgaagtttatttgaatggtatagaatatctcaatttgttga |
100 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||| |||| |||||| |||| || |||||||||||||||||||||| |
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| T |
23620126 |
acaaatctaatacttttggcagatgttctatacgtgaggaccattaagagtgttatt-------------tgaacggcatagaatatctcaatttgttga |
23620212 |
T |
|
| Q |
101 |
ggacaagcccataatt |
116 |
Q |
| |
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|||||||||||||||| |
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| T |
23620213 |
ggacaagcccataatt |
23620228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 23590947 - 23591040
Alignment:
| Q |
23 |
atgttctatacgtgaggaccattgagagcgttattcttgaagtttatttgaa----tggtatagaatatctcaatttgttgaggacaagcccat |
112 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||| ||||||| |||||||||||| | |||||||| ||||||||||||| |
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| T |
23590947 |
atgttctatacttgaggaccattgagagtgttattcttgaagtgaatttgaaagctaggtatagaatatataaatttgtttaggacaagcccat |
23591040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 23574060 - 23574126
Alignment:
| Q |
76 |
ggtatagaatatctcaatttgttgaggacaagcccataattatcaccgcaggcaggaggaccatttt |
142 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||| | |||||| |||||||||||||| |
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| T |
23574060 |
ggtatagaatatctcaatttgtttaggacaaccccataattgtaaccgcatataggaggaccatttt |
23574126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 23601725 - 23601838
Alignment:
| Q |
35 |
tgaggaccattgagagcgttattcttgaagtttatttgaatggta------tagaatatctcaatttgttgaggacaagcccataattatcaccgcaggc |
128 |
Q |
| |
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|||||||||||||||| ||||||||| || || ||||||| | || ||||||||||||||||||| ||||||| ||||||||| | |||||| |
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| T |
23601725 |
tgaggaccattgagagtgttattcttaaatttaatttgaaagctaggtatatagaatatctcaatttgtttaggacaaccccataattgtaaccgcacat |
23601824 |
T |
|
| Q |
129 |
aggaggaccatttt |
142 |
Q |
| |
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|||||||||||||| |
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| T |
23601825 |
aggaggaccatttt |
23601838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 23567266 - 23567366
Alignment:
| Q |
23 |
atgttctatacgtgaggaccattgagagcg---ttattcttgaagtttatttgaa----tggtatagaatatctcaatttgttgaggacaagcccataat |
115 |
Q |
| |
|
||||||||||| |||||||||||||||| | |||| ||||||||| ||||||| |||||||||||||| |||||||| ||||||| ||||||| |
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| T |
23567266 |
atgttctatacttgaggaccattgagagtgtaattatgcttgaagttaatttgaaagctaggtatagaatatcttaatttgtttaggacaaatccataat |
23567365 |
T |
|
| Q |
116 |
t |
116 |
Q |
| |
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| |
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|
| T |
23567366 |
t |
23567366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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