View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3190_low_37 (Length: 306)
Name: NF3190_low_37
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_37 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 105 - 276
Target Start/End: Original strand, 27848589 - 27848760
Alignment:
| Q |
105 |
ggtggatatgttcctggtggaccgggtgaaggaggtggtgatattcctggtggaggaggcgatgtaggtggtgggtatgttcctggtggaccgggcaaag |
204 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27848589 |
ggtggacatgttcctggtggaccgggtgaaggaggtggtgatattcctggtggaggaggtgatgtaggtggtgggtatgttcctggtggaccgggcgaag |
27848688 |
T |
|
| Q |
205 |
gaggtggtgatgttcctggtggaggaggcaaaggaggcgttgggtatgttcctgttagacctggtgaaggaa |
276 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27848689 |
gaggtggtgatgttcctggtgaaggagggaaaggaggcgttgggtatgttcctgttggacctggtgaaggaa |
27848760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 27848403 - 27848609
Alignment:
| Q |
18 |
ggatttgttcctggggtaggaggcggtgaatgtgtccctggttacccgtgtgaaggaagtggtggacatgttcctggtggagaagacggtggatatgttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27848403 |
ggatttgttcctggggtaggaggcggtgaatgtgtcccaggttacccgtgtgaaggaagtggtggacatgttcctggtggagaagacggtggatatgttc |
27848502 |
T |
|
| Q |
118 |
ctggtggaccgggtgaaggaggtggtg---atattcctggtggaggaggcgatgtaggtggtgggtatgttcctggtggaccgggcaaaggaggtggtg- |
213 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||||||||||||| | ||||| |||||||||||||||||||| |||||| ||||| |
|
|
| T |
27848503 |
ctggtggaccgggtgaaggagttggtggacatgttcctggtggaggagac---------ggtggatatgttcctggtggaccgggtgaaggagttggtgg |
27848593 |
T |
|
| Q |
214 |
--atgttcctggtgga |
227 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
27848594 |
acatgttcctggtgga |
27848609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 105 - 232
Target Start/End: Original strand, 27848658 - 27848785
Alignment:
| Q |
105 |
ggtggatatgttcctggtggaccgggtgaaggaggtggtgatattcctggtggaggaggcgatgtaggtggtgggtatgttcctggtggaccgggcaaag |
204 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||| ||||||||| |||||| | | ||| | |||||||||||||| |||||| || ||| |
|
|
| T |
27848658 |
ggtgggtatgttcctggtggaccgggcgaaggaggtggtgatgttcctggtgaaggagggaaaggaggcgttgggtatgttcctgttggacctggtgaag |
27848757 |
T |
|
| Q |
205 |
gaggtggtgatgttcctggtggaggagg |
232 |
Q |
| |
|
|| ||||||||| | ||||||||||| |
|
|
| T |
27848758 |
gaagtggtgatggtggaggtggaggagg |
27848785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 27848490 - 27848550
Alignment:
| Q |
174 |
ggtgggtatgttcctggtggaccgggcaaaggaggtggtg---atgttcctggtggaggag |
231 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| ||||| |||||||||||||||||| |
|
|
| T |
27848490 |
ggtggatatgttcctggtggaccgggtgaaggagttggtggacatgttcctggtggaggag |
27848550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University