View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3190_low_41 (Length: 297)

Name: NF3190_low_41
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3190_low_41
NF3190_low_41
[»] chr6 (1 HSPs)
chr6 (17-297)||(32824204-32824484)


Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 32824484 - 32824204
Alignment:
Q  17 aagttcagaattgtttctggaaattgccaatgattatgaaaatagtagataacttgaagataatgtctcattgtcatatgagataaaatagtaaatattg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32824484 aagttcagaattgtttctggaaattgccaatgattatgaaaatagtagataacttgaagataatgtctcattgtcatatgagataaaatagtaaatattg 32824385  T
Q  117 ataactttgttcgctcaatatttaggataggaaggaacttgaagaaaaaattcctataatcttttctcaatctcttagttttaattttattttatgaaca 216  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32824384 ataactttgtctgctcaatatttaggataggaaggaacttgaagaaaaaattcctataatcttttctcaatctcttaattttaattttattttatgaaca 32824285  T
Q  217 ttcttcttctcttgtctgtatataaatgaatgtaacctttattctccaaacactcctaatcatctacatgatcttattctc 297  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32824284 ttcttcttctcttgtctatatataaatgaatataacctttattctccaaacactcctaatcatctacatgatcttattctc 32824204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University