View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3190_low_44 (Length: 282)
Name: NF3190_low_44
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 23886640 - 23886377
Alignment:
| Q |
1 |
ggtgctatgaggaaaagtgtgtggagggagtagctgaagagtaacgggtcttgtaagaagaacaacattgttgcgaggagttgtgaatgtgttttgtgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23886640 |
ggtgctatgaggaaaagtgtgtggagggagtagctgaagagtgacgggtcttgtaagaagaacaacattgttgcgaggagttgtgaatgtgtattgtgtg |
23886541 |
T |
|
| Q |
101 |
atgatactactaagaaacaagatctacttattagaagagaattgatttttgtttttgacggaacttttgattatattctaatttatctacnnnnnnnnnn |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23886540 |
atgatactactaaaaaacaagatctacttattagaagagaattgatttttgtttttgacggaacttttgactatattctaatttatctactttttttttt |
23886441 |
T |
|
| Q |
201 |
cggattttccaaggcttattataatatcgtcgtttaattaatcaatgtatctgtgggggttttt |
264 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
23886440 |
cggattttccaaggcttattagaatatcgtcgtttaattaatcaaggtatctgtggggggtttt |
23886377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24346285 - 24346357
Alignment:
| Q |
1 |
ggtgctatgaggaaaagtgtgtggagggagtagctgaagagtaacgggtcttgtaagaagaacaacattgttg |
73 |
Q |
| |
|
|||||||||||||| || ||| ||| |||||| |||||||| | | |||||||||||||||||||||||||| |
|
|
| T |
24346285 |
ggtgctatgaggaagagagtgaagagagagtagttgaagagtgatgagtcttgtaagaagaacaacattgttg |
24346357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University